miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8116 3' -53.6 NC_001978.2 + 24257 1.15 0.000478
Target:  5'- uCCUUCCGAAGCGUCUUGCGCUCACCCa -3'
miRNA:   3'- -GGAAGGCUUCGCAGAACGCGAGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 23992 0.76 0.22911
Target:  5'- ---gCCGAAGCGUCgaGCacGCUCACUCa -3'
miRNA:   3'- ggaaGGCUUCGCAGaaCG--CGAGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 39786 0.74 0.313107
Target:  5'- gCUUgCCGAAGCGUCggGCgGCUU-CCCa -3'
miRNA:   3'- gGAA-GGCUUCGCAGaaCG-CGAGuGGG- -5'
8116 3' -53.6 NC_001978.2 + 39962 0.72 0.408899
Target:  5'- cCCUUgcugCCGGAGCGUCa-GCGCU-GCCUg -3'
miRNA:   3'- -GGAA----GGCUUCGCAGaaCGCGAgUGGG- -5'
8116 3' -53.6 NC_001978.2 + 21817 0.71 0.478619
Target:  5'- aUCUaCCGggGCGgCUcGCGCUucuacgucCACCCu -3'
miRNA:   3'- -GGAaGGCuuCGCaGAaCGCGA--------GUGGG- -5'
8116 3' -53.6 NC_001978.2 + 15407 0.71 0.468291
Target:  5'- --aUCUGAccGGCGUCguugGCGCgcgCACCUa -3'
miRNA:   3'- ggaAGGCU--UCGCAGaa--CGCGa--GUGGG- -5'
8116 3' -53.6 NC_001978.2 + 28829 0.7 0.510246
Target:  5'- --aUCCGggGCGUCUccgacaaucGCGCggcgaaUCAUCCa -3'
miRNA:   3'- ggaAGGCuuCGCAGAa--------CGCG------AGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 38209 0.7 0.520983
Target:  5'- gCCUUCgGGA-CGUCa-GCgGCUCGCCCc -3'
miRNA:   3'- -GGAAGgCUUcGCAGaaCG-CGAGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 13382 0.69 0.575831
Target:  5'- -----aGAAGCGcuugauccgUCUUGCGCUCguACCCg -3'
miRNA:   3'- ggaaggCUUCGC---------AGAACGCGAG--UGGG- -5'
8116 3' -53.6 NC_001978.2 + 2728 0.69 0.580284
Target:  5'- aUCUUCCGgcGCGacgacgcguguuccuUCgugaUGCGCgCGCCCc -3'
miRNA:   3'- -GGAAGGCuuCGC---------------AGa---ACGCGaGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 36814 0.69 0.564732
Target:  5'- aCgUUCCGgcGCGUCUgcCGaaCGCCCa -3'
miRNA:   3'- -GgAAGGCuuCGCAGAacGCgaGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 28427 0.69 0.553689
Target:  5'- ---gCCGAAGCGUugCUUGCcaugggcgagacGCUgACCCa -3'
miRNA:   3'- ggaaGGCUUCGCA--GAACG------------CGAgUGGG- -5'
8116 3' -53.6 NC_001978.2 + 9589 0.69 0.602649
Target:  5'- uCCUUCaggGAgucagcgacaaggucAGCGUCgcaGCGC-CACCCu -3'
miRNA:   3'- -GGAAGg--CU---------------UCGCAGaa-CGCGaGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 16275 0.68 0.643118
Target:  5'- aCCgcugCCGA--CGUUgggGCGCUCGCCa -3'
miRNA:   3'- -GGaa--GGCUucGCAGaa-CGCGAGUGGg -5'
8116 3' -53.6 NC_001978.2 + 37211 0.68 0.631869
Target:  5'- uCCUUCCGAAcGCGcCaUGUGCgaagACCUa -3'
miRNA:   3'- -GGAAGGCUU-CGCaGaACGCGag--UGGG- -5'
8116 3' -53.6 NC_001978.2 + 28514 0.68 0.643118
Target:  5'- uCCgUCCGcuGgGUCa-GCGuCUCGCCCa -3'
miRNA:   3'- -GGaAGGCuuCgCAGaaCGC-GAGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 32391 0.68 0.631869
Target:  5'- gCUUCUGugacGcCGUCUUGCGUggCGCCUu -3'
miRNA:   3'- gGAAGGCuu--C-GCAGAACGCGa-GUGGG- -5'
8116 3' -53.6 NC_001978.2 + 19722 0.68 0.631869
Target:  5'- gCCUUgUCGAAgGCGUcCUUGCGCgggUCGCUg -3'
miRNA:   3'- -GGAA-GGCUU-CGCA-GAACGCG---AGUGGg -5'
8116 3' -53.6 NC_001978.2 + 21033 0.68 0.647615
Target:  5'- gCCgUCCGucAGCGUCUccaguuccuucgugGCGCccucaaucgccuUCACCCg -3'
miRNA:   3'- -GGaAGGCu-UCGCAGAa-------------CGCG------------AGUGGG- -5'
8116 3' -53.6 NC_001978.2 + 8866 0.68 0.630744
Target:  5'- cCCgaCCGgcGCGcuucgugUCUcUGCGCUCAgCCu -3'
miRNA:   3'- -GGaaGGCuuCGC-------AGA-ACGCGAGUgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.