miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8118 5' -53.3 NC_001978.2 + 83 0.67 0.62375
Target:  5'- gGCAAGcGGCAcuucGGCACGCUGAgAa---- -3'
miRNA:   3'- -CGUUC-CCGU----UCGUGCGGCUgUguaua -5'
8118 5' -53.3 NC_001978.2 + 2744 0.69 0.5201
Target:  5'- uGCAAcGGCAaggucgaucuuccGGCGCGaCGACGCGUGUu -3'
miRNA:   3'- -CGUUcCCGU-------------UCGUGCgGCUGUGUAUA- -5'
8118 5' -53.3 NC_001978.2 + 3547 0.69 0.499218
Target:  5'- gGCAAGGGCGAGCcCGauggacucaCG-CGCAUAc -3'
miRNA:   3'- -CGUUCCCGUUCGuGCg--------GCuGUGUAUa -5'
8118 5' -53.3 NC_001978.2 + 4188 0.67 0.62375
Target:  5'- aGCGGGGGCAggcucaggcuccGGCucuuCGCCGACu----- -3'
miRNA:   3'- -CGUUCCCGU------------UCGu---GCGGCUGuguaua -5'
8118 5' -53.3 NC_001978.2 + 4374 0.72 0.377583
Target:  5'- cGCAucguuccuGGGGCAGGgGCGCCGuCGCu--- -3'
miRNA:   3'- -CGU--------UCCCGUUCgUGCGGCuGUGuaua -5'
8118 5' -53.3 NC_001978.2 + 8832 0.69 0.521208
Target:  5'- aGCGGGGGCAcugaGCGCCG-CACGc-- -3'
miRNA:   3'- -CGUUCCCGUucg-UGCGGCuGUGUaua -5'
8118 5' -53.3 NC_001978.2 + 9039 0.74 0.275314
Target:  5'- aGCAAGGGCAAGCcccuucgccuguucGCcgaacGCCGACACu--- -3'
miRNA:   3'- -CGUUCCCGUUCG--------------UG-----CGGCUGUGuaua -5'
8118 5' -53.3 NC_001978.2 + 9810 0.66 0.715552
Target:  5'- cGCu-GGGCAAGguCGaCGGCGCGg-- -3'
miRNA:   3'- -CGuuCCCGUUCguGCgGCUGUGUaua -5'
8118 5' -53.3 NC_001978.2 + 12159 0.68 0.56623
Target:  5'- uCGGGGGCAcGGCugGgggCGGCACGUGg -3'
miRNA:   3'- cGUUCCCGU-UCGugCg--GCUGUGUAUa -5'
8118 5' -53.3 NC_001978.2 + 12814 0.66 0.681455
Target:  5'- gGCGucGGGUcagacguacggAAGCACGUCGGCGgGUGg -3'
miRNA:   3'- -CGUu-CCCG-----------UUCGUGCGGCUGUgUAUa -5'
8118 5' -53.3 NC_001978.2 + 15542 0.66 0.69289
Target:  5'- gGCAGGGGCGacgucGGCAagGUCGACGgAg-- -3'
miRNA:   3'- -CGUUCCCGU-----UCGUg-CGGCUGUgUaua -5'
8118 5' -53.3 NC_001978.2 + 15656 0.66 0.669968
Target:  5'- cGCugGGGCucG-ACGgCGACACGUAc -3'
miRNA:   3'- -CGuuCCCGuuCgUGCgGCUGUGUAUa -5'
8118 5' -53.3 NC_001978.2 + 15932 0.66 0.669968
Target:  5'- aCAAGGGCGacacgGGCGCGaCgGGCGCcgAc -3'
miRNA:   3'- cGUUCCCGU-----UCGUGC-GgCUGUGuaUa -5'
8118 5' -53.3 NC_001978.2 + 16736 0.7 0.477649
Target:  5'- cGCAuAGcGGCAAGCGCGCCGGu------ -3'
miRNA:   3'- -CGU-UC-CCGUUCGUGCGGCUguguaua -5'
8118 5' -53.3 NC_001978.2 + 16773 0.7 0.477649
Target:  5'- cGCAAuGGGC-AGCggaacgGCGCCGACAUg--- -3'
miRNA:   3'- -CGUU-CCCGuUCG------UGCGGCUGUGuaua -5'
8118 5' -53.3 NC_001978.2 + 17776 0.66 0.715552
Target:  5'- --cGGGGCcgaauuGGUccgACGCCGACACGa-- -3'
miRNA:   3'- cguUCCCGu-----UCG---UGCGGCUGUGUaua -5'
8118 5' -53.3 NC_001978.2 + 22101 0.72 0.359326
Target:  5'- --cGGGGUGAGUACGUCGGC-CGUGUg -3'
miRNA:   3'- cguUCCCGUUCGUGCGGCUGuGUAUA- -5'
8118 5' -53.3 NC_001978.2 + 23734 0.67 0.635321
Target:  5'- uCGAGauuGGCGAGCACagcgccacccuuGCCGACGCGc-- -3'
miRNA:   3'- cGUUC---CCGUUCGUG------------CGGCUGUGUaua -5'
8118 5' -53.3 NC_001978.2 + 24660 1.08 0.000996
Target:  5'- gGCAAGGGCAAGCACGCCGACACAUAUg -3'
miRNA:   3'- -CGUUCCCGUUCGUGCGGCUGUGUAUA- -5'
8118 5' -53.3 NC_001978.2 + 24838 0.66 0.726753
Target:  5'- cGCugGGGCuaccGGUGCGCCuacugcGACGCAa-- -3'
miRNA:   3'- -CGuuCCCGu---UCGUGCGG------CUGUGUaua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.