Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8118 | 5' | -53.3 | NC_001978.2 | + | 17776 | 0.66 | 0.715552 |
Target: 5'- --cGGGGCcgaauuGGUccgACGCCGACACGa-- -3' miRNA: 3'- cguUCCCGu-----UCG---UGCGGCUGUGUaua -5' |
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8118 | 5' | -53.3 | NC_001978.2 | + | 28595 | 0.69 | 0.543567 |
Target: 5'- cGCGcGGGCAAGUggguaacgacguACGCCGAC-CGg-- -3' miRNA: 3'- -CGUuCCCGUUCG------------UGCGGCUGuGUaua -5' |
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8118 | 5' | -53.3 | NC_001978.2 | + | 12159 | 0.68 | 0.56623 |
Target: 5'- uCGGGGGCAcGGCugGgggCGGCACGUGg -3' miRNA: 3'- cGUUCCCGU-UCGugCg--GCUGUGUAUa -5' |
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8118 | 5' | -53.3 | NC_001978.2 | + | 83 | 0.67 | 0.62375 |
Target: 5'- gGCAAGcGGCAcuucGGCACGCUGAgAa---- -3' miRNA: 3'- -CGUUC-CCGU----UCGUGCGGCUgUguaua -5' |
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8118 | 5' | -53.3 | NC_001978.2 | + | 15932 | 0.66 | 0.669968 |
Target: 5'- aCAAGGGCGacacgGGCGCGaCgGGCGCcgAc -3' miRNA: 3'- cGUUCCCGU-----UCGUGC-GgCUGUGuaUa -5' |
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8118 | 5' | -53.3 | NC_001978.2 | + | 15656 | 0.66 | 0.669968 |
Target: 5'- cGCugGGGCucG-ACGgCGACACGUAc -3' miRNA: 3'- -CGuuCCCGuuCgUGCgGCUGUGUAUa -5' |
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8118 | 5' | -53.3 | NC_001978.2 | + | 26684 | 0.66 | 0.681455 |
Target: 5'- uGCuguGGGGCAAGgGCGCCaACGgAa-- -3' miRNA: 3'- -CGu--UCCCGUUCgUGCGGcUGUgUaua -5' |
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8118 | 5' | -53.3 | NC_001978.2 | + | 12814 | 0.66 | 0.681455 |
Target: 5'- gGCGucGGGUcagacguacggAAGCACGUCGGCGgGUGg -3' miRNA: 3'- -CGUu-CCCG-----------UUCGUGCGGCUGUgUAUa -5' |
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8118 | 5' | -53.3 | NC_001978.2 | + | 9810 | 0.66 | 0.715552 |
Target: 5'- cGCu-GGGCAAGguCGaCGGCGCGg-- -3' miRNA: 3'- -CGuuCCCGUUCguGCgGCUGUGUaua -5' |
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8118 | 5' | -53.3 | NC_001978.2 | + | 24904 | 0.69 | 0.543567 |
Target: 5'- aGCAAGGGgG---GCGCCGACGCu--- -3' miRNA: 3'- -CGUUCCCgUucgUGCGGCUGUGuaua -5' |
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8118 | 5' | -53.3 | NC_001978.2 | + | 8832 | 0.69 | 0.521208 |
Target: 5'- aGCGGGGGCAcugaGCGCCG-CACGc-- -3' miRNA: 3'- -CGUUCCCGUucg-UGCGGCuGUGUaua -5' |
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8118 | 5' | -53.3 | NC_001978.2 | + | 38364 | 0.69 | 0.510163 |
Target: 5'- -uGGGGGCGuaGGguCGCCGACAUg--- -3' miRNA: 3'- cgUUCCCGU--UCguGCGGCUGUGuaua -5' |
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8118 | 5' | -53.3 | NC_001978.2 | + | 38137 | 0.72 | 0.333117 |
Target: 5'- cGCAcGGGGCGAGC-CGCUGACgucccgaagGCGUGg -3' miRNA: 3'- -CGU-UCCCGUUCGuGCGGCUG---------UGUAUa -5' |
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8118 | 5' | -53.3 | NC_001978.2 | + | 39595 | 0.72 | 0.341695 |
Target: 5'- cGCAccuGGGC-AGCACGaaGGCACGUGc -3' miRNA: 3'- -CGUu--CCCGuUCGUGCggCUGUGUAUa -5' |
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8118 | 5' | -53.3 | NC_001978.2 | + | 22101 | 0.72 | 0.359326 |
Target: 5'- --cGGGGUGAGUACGUCGGC-CGUGUg -3' miRNA: 3'- cguUCCCGUUCGUGCGGCUGuGUAUA- -5' |
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8118 | 5' | -53.3 | NC_001978.2 | + | 38889 | 0.72 | 0.359326 |
Target: 5'- cGCGAauuGGGCGGGUACGUCGGCGgGa-- -3' miRNA: 3'- -CGUU---CCCGUUCGUGCGGCUGUgUaua -5' |
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8118 | 5' | -53.3 | NC_001978.2 | + | 4374 | 0.72 | 0.377583 |
Target: 5'- cGCAucguuccuGGGGCAGGgGCGCCGuCGCu--- -3' miRNA: 3'- -CGU--------UCCCGUUCgUGCGGCuGUGuaua -5' |
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8118 | 5' | -53.3 | NC_001978.2 | + | 25889 | 0.7 | 0.44619 |
Target: 5'- aGCgAAGGGCuugccGGGCACGguaUCGACGCGUAc -3' miRNA: 3'- -CG-UUCCCG-----UUCGUGC---GGCUGUGUAUa -5' |
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8118 | 5' | -53.3 | NC_001978.2 | + | 30347 | 0.7 | 0.481926 |
Target: 5'- -gAAGGGCAAGCgacucagcaaggaacGCGCCGAagccgcccggcuCGCGUGg -3' miRNA: 3'- cgUUCCCGUUCG---------------UGCGGCU------------GUGUAUa -5' |
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8118 | 5' | -53.3 | NC_001978.2 | + | 33132 | 0.69 | 0.499218 |
Target: 5'- ---uGGGCAAGCGuuggcacguugcCGCCGACGCu--- -3' miRNA: 3'- cguuCCCGUUCGU------------GCGGCUGUGuaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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