miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8120 5' -54.5 NC_001978.2 + 36819 0.66 0.685792
Target:  5'- cCGGCGcGUCuGCCGAACgccCAGG-Ca -3'
miRNA:   3'- -GCCGUaCAGuCGGCUUGgaaGUCCaG- -5'
8120 5' -54.5 NC_001978.2 + 3896 0.66 0.651914
Target:  5'- uCGGCuucUGUucgccgagaCGGCCGAcCgCUUCAGGUUc -3'
miRNA:   3'- -GCCGu--ACA---------GUCGGCUuG-GAAGUCCAG- -5'
8120 5' -54.5 NC_001978.2 + 25113 0.66 0.640568
Target:  5'- aGGCA-GUCAGCgaaGAGCCggaCGGGg- -3'
miRNA:   3'- gCCGUaCAGUCGg--CUUGGaa-GUCCag -5'
8120 5' -54.5 NC_001978.2 + 665 0.67 0.60539
Target:  5'- aCGGCgcggGUGgccUCAGCCucagcgcgcuucaGcGCCUUCGGGUCc -3'
miRNA:   3'- -GCCG----UAC---AGUCGG-------------CuUGGAAGUCCAG- -5'
8120 5' -54.5 NC_001978.2 + 21353 0.67 0.594077
Target:  5'- uCGGUcgGUCacucgucuucgucGGCCGuAACCagcgcgcUCAGGUCa -3'
miRNA:   3'- -GCCGuaCAG-------------UCGGC-UUGGa------AGUCCAG- -5'
8120 5' -54.5 NC_001978.2 + 25071 0.67 0.583925
Target:  5'- cCGGCucaGUCGGCgggcuuCGGACCga-AGGUCa -3'
miRNA:   3'- -GCCGua-CAGUCG------GCUUGGaagUCCAG- -5'
8120 5' -54.5 NC_001978.2 + 8529 0.67 0.569324
Target:  5'- uGGCGUcgaucucgucaaugGUCAG-CGAAUcaagCUUCAGGUCa -3'
miRNA:   3'- gCCGUA--------------CAGUCgGCUUG----GAAGUCCAG- -5'
8120 5' -54.5 NC_001978.2 + 24211 0.68 0.550372
Target:  5'- -cGCcgGUCGGCUGAACCUgaAGGa- -3'
miRNA:   3'- gcCGuaCAGUCGGCUUGGAagUCCag -5'
8120 5' -54.5 NC_001978.2 + 11421 0.68 0.549263
Target:  5'- cCGGCAUGaaAGCCGccugaagGGCgUUCAGGg- -3'
miRNA:   3'- -GCCGUACagUCGGC-------UUGgAAGUCCag -5'
8120 5' -54.5 NC_001978.2 + 36867 0.68 0.528332
Target:  5'- uGGCGUcacCGGCUGAACCcggUUgAGGUCg -3'
miRNA:   3'- gCCGUAca-GUCGGCUUGG---AAgUCCAG- -5'
8120 5' -54.5 NC_001978.2 + 25809 0.68 0.517434
Target:  5'- uGGCcgaagGUCuGaaGGGCUUUCAGGUCa -3'
miRNA:   3'- gCCGua---CAGuCggCUUGGAAGUCCAG- -5'
8120 5' -54.5 NC_001978.2 + 30513 0.69 0.495918
Target:  5'- -aGCGUGUCGGCaaggGAACCgUCGGcGUCc -3'
miRNA:   3'- gcCGUACAGUCGg---CUUGGaAGUC-CAG- -5'
8120 5' -54.5 NC_001978.2 + 26053 0.69 0.485312
Target:  5'- aCGGCGUcgugcaGUCGGCUgggGAACUUgccCGGGUCg -3'
miRNA:   3'- -GCCGUA------CAGUCGG---CUUGGAa--GUCCAG- -5'
8120 5' -54.5 NC_001978.2 + 13286 0.69 0.458261
Target:  5'- gCGGCAagGUCGGCCGucgugguccacagcaAGCCgccccagUCGGGUUc -3'
miRNA:   3'- -GCCGUa-CAGUCGGC---------------UUGGa------AGUCCAG- -5'
8120 5' -54.5 NC_001978.2 + 40869 0.69 0.454171
Target:  5'- gCGGCA-GUaCAGgCaAGCCUUCGGGUUg -3'
miRNA:   3'- -GCCGUaCA-GUCgGcUUGGAAGUCCAG- -5'
8120 5' -54.5 NC_001978.2 + 4580 0.69 0.453152
Target:  5'- aCGGuCGUGUCgggaGGUCGAucucauaccauccGCCUUCAcGGUCu -3'
miRNA:   3'- -GCC-GUACAG----UCGGCU-------------UGGAAGU-CCAG- -5'
8120 5' -54.5 NC_001978.2 + 10937 0.71 0.386023
Target:  5'- aCGGCucgacgGUcCGGCCGAACCaugcguugUCGGGUUc -3'
miRNA:   3'- -GCCGua----CA-GUCGGCUUGGa-------AGUCCAG- -5'
8120 5' -54.5 NC_001978.2 + 15810 0.71 0.383256
Target:  5'- gGGCAccccGUCGGCCGAcgugcccguuggugAcaugcuCCUUCGGGUCg -3'
miRNA:   3'- gCCGUa---CAGUCGGCU--------------U------GGAAGUCCAG- -5'
8120 5' -54.5 NC_001978.2 + 25272 1.11 0.000548
Target:  5'- aCGGCAUGUCAGCCGAACCUUCAGGUCg -3'
miRNA:   3'- -GCCGUACAGUCGGCUUGGAAGUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.