miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8121 5' -56.2 NC_001978.2 + 40674 0.66 0.604468
Target:  5'- aUCAGgGGAGUGACCGgccUGaGUGGGuAGCg -3'
miRNA:   3'- -AGUCgCCUUGCUGGU---ACgCGCCC-UUG- -5'
8121 5' -56.2 NC_001978.2 + 1704 0.66 0.604468
Target:  5'- --cGCGGAGucgaaGACCAUGCGCGccuGAuuGCg -3'
miRNA:   3'- aguCGCCUUg----CUGGUACGCGCc--CU--UG- -5'
8121 5' -56.2 NC_001978.2 + 37866 0.66 0.592223
Target:  5'- gUCGGCgGGGGCG-CCGUcccguacaacgucGCGCGuGAGCg -3'
miRNA:   3'- -AGUCG-CCUUGCuGGUA-------------CGCGCcCUUG- -5'
8121 5' -56.2 NC_001978.2 + 13891 0.66 0.549225
Target:  5'- gUCAGCgucGGAAUGGCCAcggGUGCGGc--- -3'
miRNA:   3'- -AGUCG---CCUUGCUGGUa--CGCGCCcuug -5'
8121 5' -56.2 NC_001978.2 + 35121 0.67 0.506185
Target:  5'- cCAGgaCGGAGCaaggaaGCCAcGCGCGGGcAGCa -3'
miRNA:   3'- aGUC--GCCUUGc-----UGGUaCGCGCCC-UUG- -5'
8121 5' -56.2 NC_001978.2 + 19418 0.67 0.492503
Target:  5'- -aGGCGGAGCGcgaagagcgccugaACCGUgacccGCGCGGuGACg -3'
miRNA:   3'- agUCGCCUUGC--------------UGGUA-----CGCGCCcUUG- -5'
8121 5' -56.2 NC_001978.2 + 11114 0.67 0.485207
Target:  5'- -uGGCGGAguugaGCGACuggaCAUGCGaguauCGGGGGCu -3'
miRNA:   3'- agUCGCCU-----UGCUG----GUACGC-----GCCCUUG- -5'
8121 5' -56.2 NC_001978.2 + 28025 0.68 0.461609
Target:  5'- aUCAGCGucgccuuaaucuucGuguCGACCGUGCGCGGu-GCu -3'
miRNA:   3'- -AGUCGC--------------Cuu-GCUGGUACGCGCCcuUG- -5'
8121 5' -56.2 NC_001978.2 + 40377 0.68 0.454547
Target:  5'- aCAGCGGGGCGAgCCGUugaccUGgGGGAAg -3'
miRNA:   3'- aGUCGCCUUGCU-GGUAc----GCgCCCUUg -5'
8121 5' -56.2 NC_001978.2 + 5293 0.7 0.343565
Target:  5'- -gAGCGuuccGCGAUCAUGCGCGGuGGCg -3'
miRNA:   3'- agUCGCcu--UGCUGGUACGCGCCcUUG- -5'
8121 5' -56.2 NC_001978.2 + 3226 0.7 0.343565
Target:  5'- uUCAGgGGAACGcguuccuuGCCGUGCGCuGGcaggguccGAACa -3'
miRNA:   3'- -AGUCgCCUUGC--------UGGUACGCG-CC--------CUUG- -5'
8121 5' -56.2 NC_001978.2 + 8016 0.72 0.281144
Target:  5'- uUCAGCGGAACGugCGcGCGCuccgcgacaaGGAAUu -3'
miRNA:   3'- -AGUCGCCUUGCugGUaCGCGc---------CCUUG- -5'
8121 5' -56.2 NC_001978.2 + 30390 0.72 0.267015
Target:  5'- uUCGGCGGGAUGAUCuGUGCGagcCGGGcGGCu -3'
miRNA:   3'- -AGUCGCCUUGCUGG-UACGC---GCCC-UUG- -5'
8121 5' -56.2 NC_001978.2 + 6901 0.73 0.216196
Target:  5'- aCAGCGcucuAACGGuCCGUGUGCGGGuGCg -3'
miRNA:   3'- aGUCGCc---UUGCU-GGUACGCGCCCuUG- -5'
8121 5' -56.2 NC_001978.2 + 5186 0.74 0.204857
Target:  5'- gUCGGCGGAACG-CUGaGCGCcGGAGCc -3'
miRNA:   3'- -AGUCGCCUUGCuGGUaCGCGcCCUUG- -5'
8121 5' -56.2 NC_001978.2 + 25594 1.09 0.000559
Target:  5'- uUCAGCGGAACGACCAUGCGCGGGAACc -3'
miRNA:   3'- -AGUCGCCUUGCUGGUACGCGCCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.