Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8123 | 3' | -50.4 | NC_001978.2 | + | 29395 | 0.71 | 0.629349 |
Target: 5'- gUCGCCG-ACGC--UGACCUaGggGGCCg -3' miRNA: 3'- -AGUGGUgUGUGcuACUGGA-CuuUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 39272 | 0.69 | 0.75436 |
Target: 5'- uUCGCCGCugA-GGUGAUCUacaaGAagAAGCCg -3' miRNA: 3'- -AGUGGUGugUgCUACUGGA----CU--UUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 35104 | 0.68 | 0.775808 |
Target: 5'- -aGCCACGCGCGGgcaGcACCUGAcGGGaCCc -3' miRNA: 3'- agUGGUGUGUGCUa--C-UGGACU-UUC-GG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 4658 | 0.69 | 0.75436 |
Target: 5'- cCACCgucgaGCACGCGGaaggUGAaggacgaacCCUGAAGGUCg -3' miRNA: 3'- aGUGG-----UGUGUGCU----ACU---------GGACUUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 19381 | 0.69 | 0.75436 |
Target: 5'- cCGCCGCACGcCGggGaaGCCauGAAGCCg -3' miRNA: 3'- aGUGGUGUGU-GCuaC--UGGacUUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 22308 | 0.69 | 0.732358 |
Target: 5'- -aGCCAUACGCGcAUGACCacaucGAAcgauccggcauAGCCg -3' miRNA: 3'- agUGGUGUGUGC-UACUGGa----CUU-----------UCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 2609 | 0.71 | 0.652534 |
Target: 5'- gUCACgGCACGCGucguacacGGCCUGAGuGGCa -3' miRNA: 3'- -AGUGgUGUGUGCua------CUGGACUU-UCGg -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 5359 | 0.71 | 0.602706 |
Target: 5'- cCACCGCGCAUGAUcGcggaacgcucgacaGCCUGAgcgauGAGCUg -3' miRNA: 3'- aGUGGUGUGUGCUA-C--------------UGGACU-----UUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 28875 | 0.73 | 0.515253 |
Target: 5'- aCACgCGCAUuuCGAUuGCCUGAAAGUCg -3' miRNA: 3'- aGUG-GUGUGu-GCUAcUGGACUUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 31630 | 0.73 | 0.515253 |
Target: 5'- aCGCCuuCGCACGuguacgGGCCggacgGGAAGCCg -3' miRNA: 3'- aGUGGu-GUGUGCua----CUGGa----CUUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 37856 | 0.74 | 0.439489 |
Target: 5'- gCGCCAUGCugGGUGACCcauucgagcggcaUGAGGGUUg -3' miRNA: 3'- aGUGGUGUGugCUACUGG-------------ACUUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 2210 | 0.75 | 0.391066 |
Target: 5'- gCACCGCGCACGAacUGACUc---AGCCg -3' miRNA: 3'- aGUGGUGUGUGCU--ACUGGacuuUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 17772 | 0.76 | 0.336719 |
Target: 5'- cUUACCgAC-CugGGUGACCUGGgcGCCa -3' miRNA: 3'- -AGUGG-UGuGugCUACUGGACUuuCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 7426 | 0.77 | 0.328214 |
Target: 5'- gUCGCCACGCAacccaGGUG-CUUGAAGGCg -3' miRNA: 3'- -AGUGGUGUGUg----CUACuGGACUUUCGg -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 25892 | 1.13 | 0.001322 |
Target: 5'- gUCACCACACACGAUGACCUGAAAGCCc -3' miRNA: 3'- -AGUGGUGUGUGCUACUGGACUUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 32160 | 0.68 | 0.786291 |
Target: 5'- gUCAUCACgGCACGGUcGGCCgGAAcGGCa -3' miRNA: 3'- -AGUGGUG-UGUGCUA-CUGGaCUU-UCGg -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 12107 | 0.68 | 0.786291 |
Target: 5'- cCGCCGCGCgccguaGCGAUcACCUGccAGUCg -3' miRNA: 3'- aGUGGUGUG------UGCUAcUGGACuuUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 10676 | 0.68 | 0.816623 |
Target: 5'- aCGCUGCcgACAgGAUgcGACCgGGAAGCCc -3' miRNA: 3'- aGUGGUG--UGUgCUA--CUGGaCUUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 10285 | 0.68 | 0.816623 |
Target: 5'- uUCGCCGCgu-UGAguccGGCCUGAAcGCCc -3' miRNA: 3'- -AGUGGUGuguGCUa---CUGGACUUuCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 7306 | 0.67 | 0.824397 |
Target: 5'- aCGCCGCccgugucaguaACGGUGACCUugucGAAcGCCg -3' miRNA: 3'- aGUGGUGug---------UGCUACUGGA----CUUuCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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