Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8123 | 3' | -50.4 | NC_001978.2 | + | 13803 | 0.66 | 0.887272 |
Target: 5'- aCGCCAUA-GCGAcGGCCg--GAGCCg -3' miRNA: 3'- aGUGGUGUgUGCUaCUGGacuUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 27944 | 0.69 | 0.76516 |
Target: 5'- aCACCGCGCACGGUcGACaCgaaGAuuaAGGCg -3' miRNA: 3'- aGUGGUGUGUGCUA-CUG-Ga--CU---UUCGg -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 2295 | 0.69 | 0.76516 |
Target: 5'- cUUGCCGCAUuCGc-GACCUGAAGGUg -3' miRNA: 3'- -AGUGGUGUGuGCuaCUGGACUUUCGg -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 356 | 0.68 | 0.796597 |
Target: 5'- uUCACgACcguCGCGccGACCUGuugucgcucaucGAAGCCg -3' miRNA: 3'- -AGUGgUGu--GUGCuaCUGGAC------------UUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 2519 | 0.67 | 0.835788 |
Target: 5'- cUCG-CGCGCAUGGUG-CCUGccacucAGGCCg -3' miRNA: 3'- -AGUgGUGUGUGCUACuGGACu-----UUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 36097 | 0.67 | 0.854004 |
Target: 5'- aCACCuggGCGCGCGAggaaGCC--GAAGCCg -3' miRNA: 3'- aGUGG---UGUGUGCUac--UGGacUUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 663 | 0.66 | 0.871188 |
Target: 5'- aCACgGCGCG-GGUGGCCUc--AGCCu -3' miRNA: 3'- aGUGgUGUGUgCUACUGGAcuuUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 12374 | 0.66 | 0.879371 |
Target: 5'- aUCGCCAUuguUGAUGugCcGAAGGCg -3' miRNA: 3'- -AGUGGUGuguGCUACugGaCUUUCGg -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 31139 | 0.66 | 0.887272 |
Target: 5'- -gACCACGCACGuuccGCCccgGGuuGCCg -3' miRNA: 3'- agUGGUGUGUGCuac-UGGa--CUuuCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 39272 | 0.69 | 0.75436 |
Target: 5'- uUCGCCGCugA-GGUGAUCUacaaGAagAAGCCg -3' miRNA: 3'- -AGUGGUGugUgCUACUGGA----CU--UUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 1551 | 0.69 | 0.753272 |
Target: 5'- aUUGCCGC-CGCGAucaUGcuuuaccACCUGAuAGCCg -3' miRNA: 3'- -AGUGGUGuGUGCU---AC-------UGGACUuUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 3567 | 0.69 | 0.743421 |
Target: 5'- gUACCGgGCACGAUGAgCgaaGAGGGUUu -3' miRNA: 3'- aGUGGUgUGUGCUACUgGa--CUUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 11857 | 0.73 | 0.536444 |
Target: 5'- cUUAUCGCugACGGcucgacgUGGCCUGAGuauGGCCc -3' miRNA: 3'- -AGUGGUGugUGCU-------ACUGGACUU---UCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 29395 | 0.71 | 0.629349 |
Target: 5'- gUCGCCG-ACGC--UGACCUaGggGGCCg -3' miRNA: 3'- -AGUGGUgUGUGcuACUGGA-CuuUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 21246 | 0.71 | 0.652534 |
Target: 5'- cCGCCgACGCGuuCGAccuUGACCUGAGcgcgcugguuacGGCCg -3' miRNA: 3'- aGUGG-UGUGU--GCU---ACUGGACUU------------UCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 33617 | 0.7 | 0.6641 |
Target: 5'- gUC-CCACA-GCGAaaUGACCUGGGuGCCc -3' miRNA: 3'- -AGuGGUGUgUGCU--ACUGGACUUuCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 28215 | 0.7 | 0.709909 |
Target: 5'- aCGCCgaACACGCGc--GCCUGAGcauccGGCCg -3' miRNA: 3'- aGUGG--UGUGUGCuacUGGACUU-----UCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 40366 | 0.7 | 0.709909 |
Target: 5'- gUCACCACAgcacaGCGGggcgagccguUGACCUGggGGa- -3' miRNA: 3'- -AGUGGUGUg----UGCU----------ACUGGACuuUCgg -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 25182 | 0.69 | 0.721183 |
Target: 5'- cUCugCGCAUaugGCGGggugacGACCUGAAGGUUc -3' miRNA: 3'- -AGugGUGUG---UGCUa-----CUGGACUUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 1089 | 0.69 | 0.732358 |
Target: 5'- uUCGCCccggaGCACaACGcgGACguagUGAAGGCCg -3' miRNA: 3'- -AGUGG-----UGUG-UGCuaCUGg---ACUUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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