miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8123 3' -50.4 NC_001978.2 + 32160 0.68 0.786291
Target:  5'- gUCAUCACgGCACGGUcGGCCgGAAcGGCa -3'
miRNA:   3'- -AGUGGUG-UGUGCUA-CUGGaCUU-UCGg -5'
8123 3' -50.4 NC_001978.2 + 19381 0.69 0.75436
Target:  5'- cCGCCGCACGcCGggGaaGCCauGAAGCCg -3'
miRNA:   3'- aGUGGUGUGU-GCuaC--UGGacUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 2609 0.71 0.652534
Target:  5'- gUCACgGCACGCGucguacacGGCCUGAGuGGCa -3'
miRNA:   3'- -AGUGgUGUGUGCua------CUGGACUU-UCGg -5'
8123 3' -50.4 NC_001978.2 + 37856 0.74 0.439489
Target:  5'- gCGCCAUGCugGGUGACCcauucgagcggcaUGAGGGUUg -3'
miRNA:   3'- aGUGGUGUGugCUACUGG-------------ACUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 2210 0.75 0.391066
Target:  5'- gCACCGCGCACGAacUGACUc---AGCCg -3'
miRNA:   3'- aGUGGUGUGUGCU--ACUGGacuuUCGG- -5'
8123 3' -50.4 NC_001978.2 + 17772 0.76 0.336719
Target:  5'- cUUACCgAC-CugGGUGACCUGGgcGCCa -3'
miRNA:   3'- -AGUGG-UGuGugCUACUGGACUuuCGG- -5'
8123 3' -50.4 NC_001978.2 + 7426 0.77 0.328214
Target:  5'- gUCGCCACGCAacccaGGUG-CUUGAAGGCg -3'
miRNA:   3'- -AGUGGUGUGUg----CUACuGGACUUUCGg -5'
8123 3' -50.4 NC_001978.2 + 25892 1.13 0.001322
Target:  5'- gUCACCACACACGAUGACCUGAAAGCCc -3'
miRNA:   3'- -AGUGGUGUGUGCUACUGGACUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 31630 0.73 0.515253
Target:  5'- aCGCCuuCGCACGuguacgGGCCggacgGGAAGCCg -3'
miRNA:   3'- aGUGGu-GUGUGCua----CUGGa----CUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 35104 0.68 0.775808
Target:  5'- -aGCCACGCGCGGgcaGcACCUGAcGGGaCCc -3'
miRNA:   3'- agUGGUGUGUGCUa--C-UGGACU-UUC-GG- -5'
8123 3' -50.4 NC_001978.2 + 4658 0.69 0.75436
Target:  5'- cCACCgucgaGCACGCGGaaggUGAaggacgaacCCUGAAGGUCg -3'
miRNA:   3'- aGUGG-----UGUGUGCU----ACU---------GGACUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 12107 0.68 0.786291
Target:  5'- cCGCCGCGCgccguaGCGAUcACCUGccAGUCg -3'
miRNA:   3'- aGUGGUGUG------UGCUAcUGGACuuUCGG- -5'
8123 3' -50.4 NC_001978.2 + 10676 0.68 0.816623
Target:  5'- aCGCUGCcgACAgGAUgcGACCgGGAAGCCc -3'
miRNA:   3'- aGUGGUG--UGUgCUA--CUGGaCUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 10285 0.68 0.816623
Target:  5'- uUCGCCGCgu-UGAguccGGCCUGAAcGCCc -3'
miRNA:   3'- -AGUGGUGuguGCUa---CUGGACUUuCGG- -5'
8123 3' -50.4 NC_001978.2 + 7306 0.67 0.824397
Target:  5'- aCGCCGCccgugucaguaACGGUGACCUugucGAAcGCCg -3'
miRNA:   3'- aGUGGUGug---------UGCUACUGGA----CUUuCGG- -5'
8123 3' -50.4 NC_001978.2 + 15783 0.67 0.826319
Target:  5'- uUCGCC-CACAUaGUGACCgucguuGAGCUg -3'
miRNA:   3'- -AGUGGuGUGUGcUACUGGacu---UUCGG- -5'
8123 3' -50.4 NC_001978.2 + 129 0.67 0.826319
Target:  5'- cUUGCCcagcguuCACACGGgucguUGGCCUGggGGgCg -3'
miRNA:   3'- -AGUGGu------GUGUGCU-----ACUGGACuuUCgG- -5'
8123 3' -50.4 NC_001978.2 + 8292 0.67 0.826319
Target:  5'- aUACgGCACGCGA--GCCgcuGAGCCu -3'
miRNA:   3'- aGUGgUGUGUGCUacUGGacuUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 8955 0.67 0.844108
Target:  5'- gUCGCC-CAUAaucGUGAUCUGAaugggucGAGCCa -3'
miRNA:   3'- -AGUGGuGUGUgc-UACUGGACU-------UUCGG- -5'
8123 3' -50.4 NC_001978.2 + 3071 0.67 0.854004
Target:  5'- gCGCguCAUGCGGagUGACCgucucgccGGAAGCCg -3'
miRNA:   3'- aGUGguGUGUGCU--ACUGGa-------CUUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.