miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8123 3' -50.4 NC_001978.2 + 25892 1.13 0.001322
Target:  5'- gUCACCACACACGAUGACCUGAAAGCCc -3'
miRNA:   3'- -AGUGGUGUGUGCUACUGGACUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 21619 0.77 0.31987
Target:  5'- gCGCCGCACAgcgGAUGACCUG--GGCUg -3'
miRNA:   3'- aGUGGUGUGUg--CUACUGGACuuUCGG- -5'
8123 3' -50.4 NC_001978.2 + 7426 0.77 0.328214
Target:  5'- gUCGCCACGCAacccaGGUG-CUUGAAGGCg -3'
miRNA:   3'- -AGUGGUGUGUg----CUACuGGACUUUCGg -5'
8123 3' -50.4 NC_001978.2 + 17772 0.76 0.336719
Target:  5'- cUUACCgAC-CugGGUGACCUGGgcGCCa -3'
miRNA:   3'- -AGUGG-UGuGugCUACUGGACUuuCGG- -5'
8123 3' -50.4 NC_001978.2 + 2210 0.75 0.391066
Target:  5'- gCACCGCGCACGAacUGACUc---AGCCg -3'
miRNA:   3'- aGUGGUGUGUGCU--ACUGGacuuUCGG- -5'
8123 3' -50.4 NC_001978.2 + 37856 0.74 0.439489
Target:  5'- gCGCCAUGCugGGUGACCcauucgagcggcaUGAGGGUUg -3'
miRNA:   3'- aGUGGUGUGugCUACUGG-------------ACUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 28875 0.73 0.515253
Target:  5'- aCACgCGCAUuuCGAUuGCCUGAAAGUCg -3'
miRNA:   3'- aGUG-GUGUGu-GCUAcUGGACUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 31630 0.73 0.515253
Target:  5'- aCGCCuuCGCACGuguacgGGCCggacgGGAAGCCg -3'
miRNA:   3'- aGUGGu-GUGUGCua----CUGGa----CUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 11857 0.73 0.536444
Target:  5'- cUUAUCGCugACGGcucgacgUGGCCUGAGuauGGCCc -3'
miRNA:   3'- -AGUGGUGugUGCU-------ACUGGACUU---UCGG- -5'
8123 3' -50.4 NC_001978.2 + 5359 0.71 0.602706
Target:  5'- cCACCGCGCAUGAUcGcggaacgcucgacaGCCUGAgcgauGAGCUg -3'
miRNA:   3'- aGUGGUGUGUGCUA-C--------------UGGACU-----UUCGG- -5'
8123 3' -50.4 NC_001978.2 + 29395 0.71 0.629349
Target:  5'- gUCGCCG-ACGC--UGACCUaGggGGCCg -3'
miRNA:   3'- -AGUGGUgUGUGcuACUGGA-CuuUCGG- -5'
8123 3' -50.4 NC_001978.2 + 2609 0.71 0.652534
Target:  5'- gUCACgGCACGCGucguacacGGCCUGAGuGGCa -3'
miRNA:   3'- -AGUGgUGUGUGCua------CUGGACUU-UCGg -5'
8123 3' -50.4 NC_001978.2 + 21246 0.71 0.652534
Target:  5'- cCGCCgACGCGuuCGAccuUGACCUGAGcgcgcugguuacGGCCg -3'
miRNA:   3'- aGUGG-UGUGU--GCU---ACUGGACUU------------UCGG- -5'
8123 3' -50.4 NC_001978.2 + 33617 0.7 0.6641
Target:  5'- gUC-CCACA-GCGAaaUGACCUGGGuGCCc -3'
miRNA:   3'- -AGuGGUGUgUGCU--ACUGGACUUuCGG- -5'
8123 3' -50.4 NC_001978.2 + 40366 0.7 0.709909
Target:  5'- gUCACCACAgcacaGCGGggcgagccguUGACCUGggGGa- -3'
miRNA:   3'- -AGUGGUGUg----UGCU----------ACUGGACuuUCgg -5'
8123 3' -50.4 NC_001978.2 + 28215 0.7 0.709909
Target:  5'- aCGCCgaACACGCGc--GCCUGAGcauccGGCCg -3'
miRNA:   3'- aGUGG--UGUGUGCuacUGGACUU-----UCGG- -5'
8123 3' -50.4 NC_001978.2 + 25182 0.69 0.721183
Target:  5'- cUCugCGCAUaugGCGGggugacGACCUGAAGGUUc -3'
miRNA:   3'- -AGugGUGUG---UGCUa-----CUGGACUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 1089 0.69 0.732358
Target:  5'- uUCGCCccggaGCACaACGcgGACguagUGAAGGCCg -3'
miRNA:   3'- -AGUGG-----UGUG-UGCuaCUGg---ACUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 22308 0.69 0.732358
Target:  5'- -aGCCAUACGCGcAUGACCacaucGAAcgauccggcauAGCCg -3'
miRNA:   3'- agUGGUGUGUGC-UACUGGa----CUU-----------UCGG- -5'
8123 3' -50.4 NC_001978.2 + 3567 0.69 0.743421
Target:  5'- gUACCGgGCACGAUGAgCgaaGAGGGUUu -3'
miRNA:   3'- aGUGGUgUGUGCUACUgGa--CUUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.