Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8123 | 3' | -50.4 | NC_001978.2 | + | 76 | 0.66 | 0.887272 |
Target: 5'- cUCACCuaGCGCGCGuuuuccGAgCUG-GGGCCg -3' miRNA: 3'- -AGUGG--UGUGUGCua----CUgGACuUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 129 | 0.67 | 0.826319 |
Target: 5'- cUUGCCcagcguuCACACGGgucguUGGCCUGggGGgCg -3' miRNA: 3'- -AGUGGu------GUGUGCU-----ACUGGACuuUCgG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 356 | 0.68 | 0.796597 |
Target: 5'- uUCACgACcguCGCGccGACCUGuugucgcucaucGAAGCCg -3' miRNA: 3'- -AGUGgUGu--GUGCuaCUGGAC------------UUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 663 | 0.66 | 0.871188 |
Target: 5'- aCACgGCGCG-GGUGGCCUc--AGCCu -3' miRNA: 3'- aGUGgUGUGUgCUACUGGAcuuUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 1089 | 0.69 | 0.732358 |
Target: 5'- uUCGCCccggaGCACaACGcgGACguagUGAAGGCCg -3' miRNA: 3'- -AGUGG-----UGUG-UGCuaCUGg---ACUUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 1551 | 0.69 | 0.753272 |
Target: 5'- aUUGCCGC-CGCGAucaUGcuuuaccACCUGAuAGCCg -3' miRNA: 3'- -AGUGGUGuGUGCU---AC-------UGGACUuUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 2210 | 0.75 | 0.391066 |
Target: 5'- gCACCGCGCACGAacUGACUc---AGCCg -3' miRNA: 3'- aGUGGUGUGUGCU--ACUGGacuuUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 2295 | 0.69 | 0.76516 |
Target: 5'- cUUGCCGCAUuCGc-GACCUGAAGGUg -3' miRNA: 3'- -AGUGGUGUGuGCuaCUGGACUUUCGg -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 2519 | 0.67 | 0.835788 |
Target: 5'- cUCG-CGCGCAUGGUG-CCUGccacucAGGCCg -3' miRNA: 3'- -AGUgGUGUGUGCUACuGGACu-----UUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 2609 | 0.71 | 0.652534 |
Target: 5'- gUCACgGCACGCGucguacacGGCCUGAGuGGCa -3' miRNA: 3'- -AGUGgUGUGUGCua------CUGGACUU-UCGg -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 3071 | 0.67 | 0.854004 |
Target: 5'- gCGCguCAUGCGGagUGACCgucucgccGGAAGCCg -3' miRNA: 3'- aGUGguGUGUGCU--ACUGGa-------CUUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 3567 | 0.69 | 0.743421 |
Target: 5'- gUACCGgGCACGAUGAgCgaaGAGGGUUu -3' miRNA: 3'- aGUGGUgUGUGCUACUgGa--CUUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 4476 | 0.66 | 0.9022 |
Target: 5'- aCGCUGCGagucgGCGAaGACCgUGAAGGCg -3' miRNA: 3'- aGUGGUGUg----UGCUaCUGG-ACUUUCGg -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 4658 | 0.69 | 0.75436 |
Target: 5'- cCACCgucgaGCACGCGGaaggUGAaggacgaacCCUGAAGGUCg -3' miRNA: 3'- aGUGG-----UGUGUGCU----ACU---------GGACUUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 5170 | 0.66 | 0.879371 |
Target: 5'- gCGCCGgaGCcCGAac-CCUGAAGGCCg -3' miRNA: 3'- aGUGGUg-UGuGCUacuGGACUUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 5359 | 0.71 | 0.602706 |
Target: 5'- cCACCGCGCAUGAUcGcggaacgcucgacaGCCUGAgcgauGAGCUg -3' miRNA: 3'- aGUGGUGUGUGCUA-C--------------UGGACU-----UUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 7306 | 0.67 | 0.824397 |
Target: 5'- aCGCCGCccgugucaguaACGGUGACCUugucGAAcGCCg -3' miRNA: 3'- aGUGGUGug---------UGCUACUGGA----CUUuCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 7426 | 0.77 | 0.328214 |
Target: 5'- gUCGCCACGCAacccaGGUG-CUUGAAGGCg -3' miRNA: 3'- -AGUGGUGUGUg----CUACuGGACUUUCGg -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 8292 | 0.67 | 0.826319 |
Target: 5'- aUACgGCACGCGA--GCCgcuGAGCCu -3' miRNA: 3'- aGUGgUGUGUGCUacUGGacuUUCGG- -5' |
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8123 | 3' | -50.4 | NC_001978.2 | + | 8955 | 0.67 | 0.844108 |
Target: 5'- gUCGCC-CAUAaucGUGAUCUGAaugggucGAGCCa -3' miRNA: 3'- -AGUGGuGUGUgc-UACUGGACU-------UUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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