miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8123 3' -50.4 NC_001978.2 + 76 0.66 0.887272
Target:  5'- cUCACCuaGCGCGCGuuuuccGAgCUG-GGGCCg -3'
miRNA:   3'- -AGUGG--UGUGUGCua----CUgGACuUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 129 0.67 0.826319
Target:  5'- cUUGCCcagcguuCACACGGgucguUGGCCUGggGGgCg -3'
miRNA:   3'- -AGUGGu------GUGUGCU-----ACUGGACuuUCgG- -5'
8123 3' -50.4 NC_001978.2 + 356 0.68 0.796597
Target:  5'- uUCACgACcguCGCGccGACCUGuugucgcucaucGAAGCCg -3'
miRNA:   3'- -AGUGgUGu--GUGCuaCUGGAC------------UUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 663 0.66 0.871188
Target:  5'- aCACgGCGCG-GGUGGCCUc--AGCCu -3'
miRNA:   3'- aGUGgUGUGUgCUACUGGAcuuUCGG- -5'
8123 3' -50.4 NC_001978.2 + 1089 0.69 0.732358
Target:  5'- uUCGCCccggaGCACaACGcgGACguagUGAAGGCCg -3'
miRNA:   3'- -AGUGG-----UGUG-UGCuaCUGg---ACUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 1551 0.69 0.753272
Target:  5'- aUUGCCGC-CGCGAucaUGcuuuaccACCUGAuAGCCg -3'
miRNA:   3'- -AGUGGUGuGUGCU---AC-------UGGACUuUCGG- -5'
8123 3' -50.4 NC_001978.2 + 2210 0.75 0.391066
Target:  5'- gCACCGCGCACGAacUGACUc---AGCCg -3'
miRNA:   3'- aGUGGUGUGUGCU--ACUGGacuuUCGG- -5'
8123 3' -50.4 NC_001978.2 + 2295 0.69 0.76516
Target:  5'- cUUGCCGCAUuCGc-GACCUGAAGGUg -3'
miRNA:   3'- -AGUGGUGUGuGCuaCUGGACUUUCGg -5'
8123 3' -50.4 NC_001978.2 + 2519 0.67 0.835788
Target:  5'- cUCG-CGCGCAUGGUG-CCUGccacucAGGCCg -3'
miRNA:   3'- -AGUgGUGUGUGCUACuGGACu-----UUCGG- -5'
8123 3' -50.4 NC_001978.2 + 2609 0.71 0.652534
Target:  5'- gUCACgGCACGCGucguacacGGCCUGAGuGGCa -3'
miRNA:   3'- -AGUGgUGUGUGCua------CUGGACUU-UCGg -5'
8123 3' -50.4 NC_001978.2 + 3071 0.67 0.854004
Target:  5'- gCGCguCAUGCGGagUGACCgucucgccGGAAGCCg -3'
miRNA:   3'- aGUGguGUGUGCU--ACUGGa-------CUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 3567 0.69 0.743421
Target:  5'- gUACCGgGCACGAUGAgCgaaGAGGGUUu -3'
miRNA:   3'- aGUGGUgUGUGCUACUgGa--CUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 4476 0.66 0.9022
Target:  5'- aCGCUGCGagucgGCGAaGACCgUGAAGGCg -3'
miRNA:   3'- aGUGGUGUg----UGCUaCUGG-ACUUUCGg -5'
8123 3' -50.4 NC_001978.2 + 4658 0.69 0.75436
Target:  5'- cCACCgucgaGCACGCGGaaggUGAaggacgaacCCUGAAGGUCg -3'
miRNA:   3'- aGUGG-----UGUGUGCU----ACU---------GGACUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 5170 0.66 0.879371
Target:  5'- gCGCCGgaGCcCGAac-CCUGAAGGCCg -3'
miRNA:   3'- aGUGGUg-UGuGCUacuGGACUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 5359 0.71 0.602706
Target:  5'- cCACCGCGCAUGAUcGcggaacgcucgacaGCCUGAgcgauGAGCUg -3'
miRNA:   3'- aGUGGUGUGUGCUA-C--------------UGGACU-----UUCGG- -5'
8123 3' -50.4 NC_001978.2 + 7306 0.67 0.824397
Target:  5'- aCGCCGCccgugucaguaACGGUGACCUugucGAAcGCCg -3'
miRNA:   3'- aGUGGUGug---------UGCUACUGGA----CUUuCGG- -5'
8123 3' -50.4 NC_001978.2 + 7426 0.77 0.328214
Target:  5'- gUCGCCACGCAacccaGGUG-CUUGAAGGCg -3'
miRNA:   3'- -AGUGGUGUGUg----CUACuGGACUUUCGg -5'
8123 3' -50.4 NC_001978.2 + 8292 0.67 0.826319
Target:  5'- aUACgGCACGCGA--GCCgcuGAGCCu -3'
miRNA:   3'- aGUGgUGUGUGCUacUGGacuUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 8955 0.67 0.844108
Target:  5'- gUCGCC-CAUAaucGUGAUCUGAaugggucGAGCCa -3'
miRNA:   3'- -AGUGGuGUGUgc-UACUGGACU-------UUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.