miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8123 3' -50.4 NC_001978.2 + 40366 0.7 0.709909
Target:  5'- gUCACCACAgcacaGCGGggcgagccguUGACCUGggGGa- -3'
miRNA:   3'- -AGUGGUGUg----UGCU----------ACUGGACuuUCgg -5'
8123 3' -50.4 NC_001978.2 + 39272 0.69 0.75436
Target:  5'- uUCGCCGCugA-GGUGAUCUacaaGAagAAGCCg -3'
miRNA:   3'- -AGUGGUGugUgCUACUGGA----CU--UUCGG- -5'
8123 3' -50.4 NC_001978.2 + 37856 0.74 0.439489
Target:  5'- gCGCCAUGCugGGUGACCcauucgagcggcaUGAGGGUUg -3'
miRNA:   3'- aGUGGUGUGugCUACUGG-------------ACUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 37763 0.66 0.887272
Target:  5'- aUCACCcagggGCGCACGAcgGGCg-GGuuGCCg -3'
miRNA:   3'- -AGUGG-----UGUGUGCUa-CUGgaCUuuCGG- -5'
8123 3' -50.4 NC_001978.2 + 36097 0.67 0.854004
Target:  5'- aCACCuggGCGCGCGAggaaGCC--GAAGCCg -3'
miRNA:   3'- aGUGG---UGUGUGCUac--UGGacUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 35104 0.68 0.775808
Target:  5'- -aGCCACGCGCGGgcaGcACCUGAcGGGaCCc -3'
miRNA:   3'- agUGGUGUGUGCUa--C-UGGACU-UUC-GG- -5'
8123 3' -50.4 NC_001978.2 + 33617 0.7 0.6641
Target:  5'- gUC-CCACA-GCGAaaUGACCUGGGuGCCc -3'
miRNA:   3'- -AGuGGUGUgUGCU--ACUGGACUUuCGG- -5'
8123 3' -50.4 NC_001978.2 + 32160 0.68 0.786291
Target:  5'- gUCAUCACgGCACGGUcGGCCgGAAcGGCa -3'
miRNA:   3'- -AGUGGUG-UGUGCUA-CUGGaCUU-UCGg -5'
8123 3' -50.4 NC_001978.2 + 31630 0.73 0.515253
Target:  5'- aCGCCuuCGCACGuguacgGGCCggacgGGAAGCCg -3'
miRNA:   3'- aGUGGu-GUGUGCua----CUGGa----CUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 31139 0.66 0.887272
Target:  5'- -gACCACGCACGuuccGCCccgGGuuGCCg -3'
miRNA:   3'- agUGGUGUGUGCuac-UGGa--CUuuCGG- -5'
8123 3' -50.4 NC_001978.2 + 29395 0.71 0.629349
Target:  5'- gUCGCCG-ACGC--UGACCUaGggGGCCg -3'
miRNA:   3'- -AGUGGUgUGUGcuACUGGA-CuuUCGG- -5'
8123 3' -50.4 NC_001978.2 + 28875 0.73 0.515253
Target:  5'- aCACgCGCAUuuCGAUuGCCUGAAAGUCg -3'
miRNA:   3'- aGUG-GUGUGu-GCUAcUGGACUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 28215 0.7 0.709909
Target:  5'- aCGCCgaACACGCGc--GCCUGAGcauccGGCCg -3'
miRNA:   3'- aGUGG--UGUGUGCuacUGGACUU-----UCGG- -5'
8123 3' -50.4 NC_001978.2 + 27944 0.69 0.76516
Target:  5'- aCACCGCGCACGGUcGACaCgaaGAuuaAGGCg -3'
miRNA:   3'- aGUGGUGUGUGCUA-CUG-Ga--CU---UUCGg -5'
8123 3' -50.4 NC_001978.2 + 25892 1.13 0.001322
Target:  5'- gUCACCACACACGAUGACCUGAAAGCCc -3'
miRNA:   3'- -AGUGGUGUGUGCUACUGGACUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 25182 0.69 0.721183
Target:  5'- cUCugCGCAUaugGCGGggugacGACCUGAAGGUUc -3'
miRNA:   3'- -AGugGUGUG---UGCUa-----CUGGACUUUCGG- -5'
8123 3' -50.4 NC_001978.2 + 22308 0.69 0.732358
Target:  5'- -aGCCAUACGCGcAUGACCacaucGAAcgauccggcauAGCCg -3'
miRNA:   3'- agUGGUGUGUGC-UACUGGa----CUU-----------UCGG- -5'
8123 3' -50.4 NC_001978.2 + 21619 0.77 0.31987
Target:  5'- gCGCCGCACAgcgGAUGACCUG--GGCUg -3'
miRNA:   3'- aGUGGUGUGUg--CUACUGGACuuUCGG- -5'
8123 3' -50.4 NC_001978.2 + 21246 0.71 0.652534
Target:  5'- cCGCCgACGCGuuCGAccuUGACCUGAGcgcgcugguuacGGCCg -3'
miRNA:   3'- aGUGG-UGUGU--GCU---ACUGGACUU------------UCGG- -5'
8123 3' -50.4 NC_001978.2 + 19381 0.69 0.75436
Target:  5'- cCGCCGCACGcCGggGaaGCCauGAAGCCg -3'
miRNA:   3'- aGUGGUGUGU-GCuaC--UGGacUUUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.