miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8124 3' -52.4 NC_001978.2 + 32358 0.66 0.834396
Target:  5'- aGCgUC-CGCCGaACGgcUCGACGCAuGGa -3'
miRNA:   3'- gUG-AGaGCGGCaUGC--AGCUGUGUuCC- -5'
8124 3' -52.4 NC_001978.2 + 30533 0.66 0.815684
Target:  5'- gGCUCuUCGUCGUAgugcuuagcgUGUCGGCA-AGGGa -3'
miRNA:   3'- gUGAG-AGCGGCAU----------GCAGCUGUgUUCC- -5'
8124 3' -52.4 NC_001978.2 + 38103 0.66 0.815684
Target:  5'- uCACcggCUCGCCGU-CGUCGuCcUggGGc -3'
miRNA:   3'- -GUGa--GAGCGGCAuGCAGCuGuGuuCC- -5'
8124 3' -52.4 NC_001978.2 + 39162 0.67 0.786123
Target:  5'- aCGCUgaCGCCGUGC--CGACcCGGGGc -3'
miRNA:   3'- -GUGAgaGCGGCAUGcaGCUGuGUUCC- -5'
8124 3' -52.4 NC_001978.2 + 32888 0.67 0.786123
Target:  5'- aGCUCcgucagaagCGCaCGcgagACGUCGcGCACAAGGa -3'
miRNA:   3'- gUGAGa--------GCG-GCa---UGCAGC-UGUGUUCC- -5'
8124 3' -52.4 NC_001978.2 + 30731 0.67 0.765554
Target:  5'- uCACgC-CGCCGUgucgACGUCGACcgAAGGg -3'
miRNA:   3'- -GUGaGaGCGGCA----UGCAGCUGugUUCC- -5'
8124 3' -52.4 NC_001978.2 + 2155 0.67 0.755046
Target:  5'- -gUUCgugCGCgGUGCGUCGACAU--GGu -3'
miRNA:   3'- guGAGa--GCGgCAUGCAGCUGUGuuCC- -5'
8124 3' -52.4 NC_001978.2 + 18897 0.67 0.755046
Target:  5'- gCGCUC-CGCa--GCGUCGAUAgCGGGGa -3'
miRNA:   3'- -GUGAGaGCGgcaUGCAGCUGU-GUUCC- -5'
8124 3' -52.4 NC_001978.2 + 28305 0.67 0.744407
Target:  5'- gGCUCgCGCUugaucuugaGUACGUCGACACc--- -3'
miRNA:   3'- gUGAGaGCGG---------CAUGCAGCUGUGuucc -5'
8124 3' -52.4 NC_001978.2 + 16180 0.67 0.744407
Target:  5'- aACgggaaUCGCCccgACGUCGGCagcgGCAAGGg -3'
miRNA:   3'- gUGag---AGCGGca-UGCAGCUG----UGUUCC- -5'
8124 3' -52.4 NC_001978.2 + 20182 0.68 0.689665
Target:  5'- aCGCUCagaucagCGCCGUucacgggcACGUCGACAacauCAAGa -3'
miRNA:   3'- -GUGAGa------GCGGCA--------UGCAGCUGU----GUUCc -5'
8124 3' -52.4 NC_001978.2 + 26059 0.69 0.678493
Target:  5'- gACUUgacggCGUCGUGCaGUCGGCugGGGa -3'
miRNA:   3'- gUGAGa----GCGGCAUG-CAGCUGugUUCc -5'
8124 3' -52.4 NC_001978.2 + 6902 0.69 0.649259
Target:  5'- gACUC-CgGCCGUACGUcCaugagccccgggaccGACACAAGGu -3'
miRNA:   3'- gUGAGaG-CGGCAUGCA-G---------------CUGUGUUCC- -5'
8124 3' -52.4 NC_001978.2 + 26212 1.1 0.001453
Target:  5'- uCACUCUCGCCGUACGUCGACACAAGGu -3'
miRNA:   3'- -GUGAGAGCGGCAUGCAGCUGUGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.