miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8124 5' -62.2 NC_001978.2 + 25641 0.66 0.310686
Target:  5'- aCGgGCAGCGcUgGGCGCCguaUGGcGUGUUc -3'
miRNA:   3'- -GCgCGUCGC-AgCCGCGGg--ACU-CACGA- -5'
8124 5' -62.2 NC_001978.2 + 215 0.66 0.29592
Target:  5'- uCGUGUacgAGgGUCGaGCGCCCcGuGUGCc -3'
miRNA:   3'- -GCGCG---UCgCAGC-CGCGGGaCuCACGa -5'
8124 5' -62.2 NC_001978.2 + 4452 0.66 0.29592
Target:  5'- uGuCGCAGCGaCGGCGCCCc---UGCc -3'
miRNA:   3'- gC-GCGUCGCaGCCGCGGGacucACGa -5'
8124 5' -62.2 NC_001978.2 + 30430 0.66 0.274803
Target:  5'- cCGgGCGGCuUCGGCGCguuccuugCUGAGUcGCUu -3'
miRNA:   3'- -GCgCGUCGcAGCCGCGg-------GACUCA-CGA- -5'
8124 5' -62.2 NC_001978.2 + 14566 0.67 0.25491
Target:  5'- gCGCGUccGGCGUCGG-GCCUUccgguaacGGUGCUg -3'
miRNA:   3'- -GCGCG--UCGCAGCCgCGGGAc-------UCACGA- -5'
8124 5' -62.2 NC_001978.2 + 20239 0.67 0.247918
Target:  5'- gGCGCugaucugAGCGUCaaCGUCCUGGGUGUc -3'
miRNA:   3'- gCGCG-------UCGCAGccGCGGGACUCACGa -5'
8124 5' -62.2 NC_001978.2 + 29862 0.68 0.207621
Target:  5'- uGCGCaaAGCGggGGCGaCCCUuccGGGUGCc -3'
miRNA:   3'- gCGCG--UCGCagCCGC-GGGA---CUCACGa -5'
8124 5' -62.2 NC_001978.2 + 24442 0.69 0.177302
Target:  5'- gGCGCAGCGUCGG-GCCCgaUGAa---- -3'
miRNA:   3'- gCGCGUCGCAGCCgCGGG--ACUcacga -5'
8124 5' -62.2 NC_001978.2 + 18167 0.69 0.177302
Target:  5'- cCGU-CAGCGUCGGCGCCg-GAGUaaccGCg -3'
miRNA:   3'- -GCGcGUCGCAGCCGCGGgaCUCA----CGa -5'
8124 5' -62.2 NC_001978.2 + 24969 0.87 0.007455
Target:  5'- uGCGCAGCGUCGGCGCCCcccuugcucagcGGGUGCa -3'
miRNA:   3'- gCGCGUCGCAGCCGCGGGa-----------CUCACGa -5'
8124 5' -62.2 NC_001978.2 + 26174 1.06 0.000216
Target:  5'- gCGCGCAGCGUCGGCGCCCUGAGUGCUc -3'
miRNA:   3'- -GCGCGUCGCAGCCGCGGGACUCACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.