miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8126 5' -56 NC_001978.2 + 20019 0.66 0.644301
Target:  5'- gCCGggugcuCGAAGGUCGugC-CGaCCGg- -3'
miRNA:   3'- gGGCau----GCUUCCAGCugGuGC-GGCaa -5'
8126 5' -56 NC_001978.2 + 11607 0.66 0.644301
Target:  5'- aCCGUGCGGgcAGcGUCGcCCACGauGUa -3'
miRNA:   3'- gGGCAUGCU--UC-CAGCuGGUGCggCAa -5'
8126 5' -56 NC_001978.2 + 13291 0.66 0.644301
Target:  5'- uUCCG-GCGGcaAGGUCGGCCGuCGUgGUc -3'
miRNA:   3'- -GGGCaUGCU--UCCAGCUGGU-GCGgCAa -5'
8126 5' -56 NC_001978.2 + 20518 0.66 0.622182
Target:  5'- gCCGUccuUGAucAGGUCGGgCACGCCu-- -3'
miRNA:   3'- gGGCAu--GCU--UCCAGCUgGUGCGGcaa -5'
8126 5' -56 NC_001978.2 + 12507 0.66 0.589093
Target:  5'- cUCCGUcgGCGuucccGGUCGGCuuCACGCUGUa -3'
miRNA:   3'- -GGGCA--UGCuu---CCAGCUG--GUGCGGCAa -5'
8126 5' -56 NC_001978.2 + 36883 0.66 0.589093
Target:  5'- aCCCGguu-GAGGUCGcuGCCGCuGCCGg- -3'
miRNA:   3'- -GGGCaugcUUCCAGC--UGGUG-CGGCaa -5'
8126 5' -56 NC_001978.2 + 38584 0.67 0.582508
Target:  5'- cCCCGUcgcgcucgacuucgcGCuGAAGGUCGGCCGCcUUGUc -3'
miRNA:   3'- -GGGCA---------------UG-CUUCCAGCUGGUGcGGCAa -5'
8126 5' -56 NC_001978.2 + 31577 0.67 0.578125
Target:  5'- -aCGUGCGAAGGcguugaggaCGAagACGCCGUUa -3'
miRNA:   3'- ggGCAUGCUUCCa--------GCUggUGCGGCAA- -5'
8126 5' -56 NC_001978.2 + 6747 0.67 0.567201
Target:  5'- gCCGgucACGuuGGUUGGCUucGCGCCGg- -3'
miRNA:   3'- gGGCa--UGCuuCCAGCUGG--UGCGGCaa -5'
8126 5' -56 NC_001978.2 + 17602 0.67 0.556331
Target:  5'- -aCGUugGcGGcUCGACCACGCCu-- -3'
miRNA:   3'- ggGCAugCuUCcAGCUGGUGCGGcaa -5'
8126 5' -56 NC_001978.2 + 20371 0.67 0.542292
Target:  5'- cCCCGgaagccgaagcgGCGAAGGcCGAagucgagUCGCGCCGg- -3'
miRNA:   3'- -GGGCa-----------UGCUUCCaGCU-------GGUGCGGCaa -5'
8126 5' -56 NC_001978.2 + 11734 0.67 0.539069
Target:  5'- gCCGUACuGAgugaagcggcuuaccGGGUCGuCCGgCGCCGg- -3'
miRNA:   3'- gGGCAUG-CU---------------UCCAGCuGGU-GCGGCaa -5'
8126 5' -56 NC_001978.2 + 5802 0.68 0.513533
Target:  5'- gCCGcACGAAGGUCGuuCACGaCGa- -3'
miRNA:   3'- gGGCaUGCUUCCAGCugGUGCgGCaa -5'
8126 5' -56 NC_001978.2 + 28698 0.68 0.507226
Target:  5'- gCCCGUGCGGaucgugguuguucgcGaaccGGUCGGCgUACGUCGUUa -3'
miRNA:   3'- -GGGCAUGCU---------------U----CCAGCUG-GUGCGGCAA- -5'
8126 5' -56 NC_001978.2 + 18729 0.68 0.501994
Target:  5'- gCCGUACGAcgucggaaugagcGGGUCGAUUcggaGCGCUGc- -3'
miRNA:   3'- gGGCAUGCU-------------UCCAGCUGG----UGCGGCaa -5'
8126 5' -56 NC_001978.2 + 35692 0.7 0.413431
Target:  5'- cCCCGUACGGAgccggagacGGacgacaCGGCCACGCUGc- -3'
miRNA:   3'- -GGGCAUGCUU---------CCa-----GCUGGUGCGGCaa -5'
8126 5' -56 NC_001978.2 + 21484 0.7 0.413431
Target:  5'- uCCCGguCGggGGcUCGACUcCGCCGa- -3'
miRNA:   3'- -GGGCauGCuuCC-AGCUGGuGCGGCaa -5'
8126 5' -56 NC_001978.2 + 31124 0.7 0.376879
Target:  5'- aCCCGggGCGGAGc-UGACCACGCaCGUUc -3'
miRNA:   3'- -GGGCa-UGCUUCcaGCUGGUGCG-GCAA- -5'
8126 5' -56 NC_001978.2 + 25733 0.71 0.359438
Target:  5'- gCCGUAUc--GGUCGGCUaugACGCCGUUg -3'
miRNA:   3'- gGGCAUGcuuCCAGCUGG---UGCGGCAA- -5'
8126 5' -56 NC_001978.2 + 22270 0.71 0.326277
Target:  5'- gCCGUACGu--GUcCGACCACGCCa-- -3'
miRNA:   3'- gGGCAUGCuucCA-GCUGGUGCGGcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.