miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8127 5' -61.3 NC_001978.2 + 18632 0.66 0.323975
Target:  5'- cGCGCCCcgacggaauccUUGCCCgACugagcGCGCC-CGAu -3'
miRNA:   3'- -CGCGGG-----------AACGGGgUGu----CGUGGcGCUu -5'
8127 5' -61.3 NC_001978.2 + 33562 0.66 0.323975
Target:  5'- uCGCCCUUGUC----GGCGCCGUGAc -3'
miRNA:   3'- cGCGGGAACGGggugUCGUGGCGCUu -5'
8127 5' -61.3 NC_001978.2 + 37903 0.66 0.323188
Target:  5'- gGgGCaCUUcGCCCCACguccgguAGCACCGCa-- -3'
miRNA:   3'- -CgCG-GGAaCGGGGUG-------UCGUGGCGcuu -5'
8127 5' -61.3 NC_001978.2 + 4440 0.66 0.319272
Target:  5'- gGCGCCCcUGCCCCAggaacgaugcguuccCGGaaGCCGCc-- -3'
miRNA:   3'- -CGCGGGaACGGGGU---------------GUCg-UGGCGcuu -5'
8127 5' -61.3 NC_001978.2 + 21603 0.66 0.316166
Target:  5'- uCGUCa-UGCCgUCACAGCGCCGCa-- -3'
miRNA:   3'- cGCGGgaACGG-GGUGUCGUGGCGcuu -5'
8127 5' -61.3 NC_001978.2 + 34144 0.66 0.308499
Target:  5'- uGCGUCCgccggagcgUGCCCacgugggcaaCugAGCGCCGuCGAGu -3'
miRNA:   3'- -CGCGGGa--------ACGGG----------GugUCGUGGC-GCUU- -5'
8127 5' -61.3 NC_001978.2 + 803 0.66 0.308499
Target:  5'- cGCGCCCagGCgCCGgAGCACU-CGAc -3'
miRNA:   3'- -CGCGGGaaCGgGGUgUCGUGGcGCUu -5'
8127 5' -61.3 NC_001978.2 + 9069 0.66 0.293594
Target:  5'- aCGUCCUUGCCgCC-CAGUugGgCGCGAc -3'
miRNA:   3'- cGCGGGAACGG-GGuGUCG--UgGCGCUu -5'
8127 5' -61.3 NC_001978.2 + 19933 0.66 0.293594
Target:  5'- cGCGUCg--GCCCC-CGGCACgGCGc- -3'
miRNA:   3'- -CGCGGgaaCGGGGuGUCGUGgCGCuu -5'
8127 5' -61.3 NC_001978.2 + 2690 0.66 0.293594
Target:  5'- cGCGCCCcggGCgucuuCCUuCAGUACCGCGu- -3'
miRNA:   3'- -CGCGGGaa-CG-----GGGuGUCGUGGCGCuu -5'
8127 5' -61.3 NC_001978.2 + 26792 0.66 0.286354
Target:  5'- uGCGCCCgaacacGUCCguCAGCGucuCCGUGAAc -3'
miRNA:   3'- -CGCGGGaa----CGGGguGUCGU---GGCGCUU- -5'
8127 5' -61.3 NC_001978.2 + 32595 0.66 0.285638
Target:  5'- uCGCCCUUGCUCgACgcguacgAGUAUCGCGu- -3'
miRNA:   3'- cGCGGGAACGGGgUG-------UCGUGGCGCuu -5'
8127 5' -61.3 NC_001978.2 + 16154 0.67 0.265481
Target:  5'- uGCGUCCggcgUUGCCaCgCugGGCACCGaCGGg -3'
miRNA:   3'- -CGCGGG----AACGG-G-GugUCGUGGC-GCUu -5'
8127 5' -61.3 NC_001978.2 + 25015 0.67 0.265481
Target:  5'- cGCGCCCUUGCUCagguugCACuucGCGCaCGcCGGAa -3'
miRNA:   3'- -CGCGGGAACGGG------GUGu--CGUG-GC-GCUU- -5'
8127 5' -61.3 NC_001978.2 + 30715 0.67 0.258803
Target:  5'- aCGCCCUUGCCguccuUCACGcCGCCGUGu- -3'
miRNA:   3'- cGCGGGAACGG-----GGUGUcGUGGCGCuu -5'
8127 5' -61.3 NC_001978.2 + 24898 0.67 0.252262
Target:  5'- gGCGCaCCgguaGCCCC--AGCGCCGCa-- -3'
miRNA:   3'- -CGCG-GGaa--CGGGGugUCGUGGCGcuu -5'
8127 5' -61.3 NC_001978.2 + 19392 0.67 0.245858
Target:  5'- aUGCCCgguUGCCgCCGCA-CGCCGgGGAa -3'
miRNA:   3'- cGCGGGa--ACGG-GGUGUcGUGGCgCUU- -5'
8127 5' -61.3 NC_001978.2 + 9662 0.68 0.23897
Target:  5'- gGCGCCgUUcaGCCCCAUGGacuuguaCGCCGCGu- -3'
miRNA:   3'- -CGCGGgAA--CGGGGUGUC-------GUGGCGCuu -5'
8127 5' -61.3 NC_001978.2 + 231 0.68 0.227453
Target:  5'- aGCGCCCcgUGUgCCCGC-GCACCugaagGCGAc -3'
miRNA:   3'- -CGCGGGa-ACG-GGGUGuCGUGG-----CGCUu -5'
8127 5' -61.3 NC_001978.2 + 15964 0.69 0.187507
Target:  5'- cGCGCCCUUGauguuCCCCuuCAagucccagccggacGCACCGCGu- -3'
miRNA:   3'- -CGCGGGAAC-----GGGGu-GU--------------CGUGGCGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.