miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8128 5' -56.7 NC_001978.2 + 304 0.71 0.305897
Target:  5'- gUCGCCUUCaGGuGCGCgGgcacACGGGGCg -3'
miRNA:   3'- gAGCGGAAG-CC-UGCGgUac--UGCUCCG- -5'
8128 5' -56.7 NC_001978.2 + 31344 0.72 0.276615
Target:  5'- gUCGCCgUCGGcguugGCCGUGACGAacucgacguuGGCg -3'
miRNA:   3'- gAGCGGaAGCCug---CGGUACUGCU----------CCG- -5'
8128 5' -56.7 NC_001978.2 + 22389 0.69 0.416944
Target:  5'- gUCGCCUUC-GACGucuuccagucgcCCAUGAucaggUGAGGCu -3'
miRNA:   3'- gAGCGGAAGcCUGC------------GGUACU-----GCUCCG- -5'
8128 5' -56.7 NC_001978.2 + 5389 0.69 0.416944
Target:  5'- uUCGCg-UCGGACGUCGUGA--AGGUc -3'
miRNA:   3'- gAGCGgaAGCCUGCGGUACUgcUCCG- -5'
8128 5' -56.7 NC_001978.2 + 8255 0.68 0.426454
Target:  5'- -gCGCCcuucgCGGACGCCGUGACcuuaauGGa -3'
miRNA:   3'- gaGCGGaa---GCCUGCGGUACUGcu----CCg -5'
8128 5' -56.7 NC_001978.2 + 10347 0.68 0.426454
Target:  5'- -cCGCCaUUCGGGCGCCcUGAaucauggacUGAGcGCc -3'
miRNA:   3'- gaGCGG-AAGCCUGCGGuACU---------GCUC-CG- -5'
8128 5' -56.7 NC_001978.2 + 37864 0.68 0.455733
Target:  5'- -aCGCCU--GGGCGCCAUG-CuGGGUg -3'
miRNA:   3'- gaGCGGAagCCUGCGGUACuGcUCCG- -5'
8128 5' -56.7 NC_001978.2 + 37187 0.68 0.475843
Target:  5'- -gCGUCUUCGGuC-CCAUGGCGcccaGGGUa -3'
miRNA:   3'- gaGCGGAAGCCuGcGGUACUGC----UCCG- -5'
8128 5' -56.7 NC_001978.2 + 22958 0.68 0.475843
Target:  5'- gUCGCgCgucaCGGGCGUCAcGAUGAGcGCg -3'
miRNA:   3'- gAGCG-Gaa--GCCUGCGGUaCUGCUC-CG- -5'
8128 5' -56.7 NC_001978.2 + 36795 0.67 0.527915
Target:  5'- --gGCCUg-GGGCGCCGucuccggcuccgUGACG-GGCu -3'
miRNA:   3'- gagCGGAagCCUGCGGU------------ACUGCuCCG- -5'
8128 5' -56.7 NC_001978.2 + 23283 0.66 0.592926
Target:  5'- uUCGCCggUCGaGAuaCGCCAcuUGuCGAGcGCg -3'
miRNA:   3'- gAGCGGa-AGC-CU--GCGGU--ACuGCUC-CG- -5'
8128 5' -56.7 NC_001978.2 + 26906 1.13 0.000306
Target:  5'- aCUCGCCUUCGGACGCCAUGACGAGGCg -3'
miRNA:   3'- -GAGCGGAAGCCUGCGGUACUGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.