Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8128 | 5' | -56.7 | NC_001978.2 | + | 2710 | 0.75 | 0.176643 |
Target: 5'- gCUCGCCgUUCacGGCGCUGUGAUGuGGCg -3' miRNA: 3'- -GAGCGG-AAGc-CUGCGGUACUGCuCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 3541 | 0.66 | 0.592926 |
Target: 5'- -gCGCCaugcCGGGCGCUGUGguuGAGGUa -3' miRNA: 3'- gaGCGGaa--GCCUGCGGUACug-CUCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 10123 | 0.66 | 0.571035 |
Target: 5'- gUCGCCUggGuGACGUCAaGcGCGAcGGCg -3' miRNA: 3'- gAGCGGAagC-CUGCGGUaC-UGCU-CCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 13460 | 0.67 | 0.538593 |
Target: 5'- gUCGCCgaagccauaUCGGAgcuUGCCGaagaUGACGGcGGCu -3' miRNA: 3'- gAGCGGa--------AGCCU---GCGGU----ACUGCU-CCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 9073 | 0.67 | 0.538593 |
Target: 5'- cCUUGCCgcccagUUGGGCGCgAcuccGGCuGAGGCu -3' miRNA: 3'- -GAGCGGa-----AGCCUGCGgUa---CUG-CUCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 11034 | 0.67 | 0.517317 |
Target: 5'- gUCGCCU--GGGCGCUgcgGACGucuccGGCg -3' miRNA: 3'- gAGCGGAagCCUGCGGua-CUGCu----CCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 16744 | 0.67 | 0.506804 |
Target: 5'- uUCaGCCU--GGGCGCUacuggGUGACGuGGCu -3' miRNA: 3'- gAG-CGGAagCCUGCGG-----UACUGCuCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 22885 | 0.68 | 0.475843 |
Target: 5'- uCUCGCgCUcaUCGuGACGcCCGUGACGcgcgacuaGGGUc -3' miRNA: 3'- -GAGCG-GA--AGC-CUGC-GGUACUGC--------UCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 30772 | 0.68 | 0.455733 |
Target: 5'- -aCGaCCUUCGuGACGuUCGUGACGAccgcauGGCc -3' miRNA: 3'- gaGC-GGAAGC-CUGC-GGUACUGCU------CCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 1755 | 0.68 | 0.455733 |
Target: 5'- -gUGUCggCGGACGCCG-GACGgcaacaGGGCu -3' miRNA: 3'- gaGCGGaaGCCUGCGGUaCUGC------UCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 33561 | 0.73 | 0.224827 |
Target: 5'- gUCGCCcuugUCGG-CGCCGUGACcgucGGGUg -3' miRNA: 3'- gAGCGGa---AGCCuGCGGUACUGc---UCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 36611 | 0.72 | 0.269653 |
Target: 5'- uCUCGCCgaagUCGGGC-CCGUGuacAUGaAGGCg -3' miRNA: 3'- -GAGCGGa---AGCCUGcGGUAC---UGC-UCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 8318 | 0.71 | 0.290967 |
Target: 5'- aUgGCCcguaagUCGGACGUCGUGGCGGcaacuuacgaacGGCg -3' miRNA: 3'- gAgCGGa-----AGCCUGCGGUACUGCU------------CCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 33108 | 0.7 | 0.329379 |
Target: 5'- ---aCCUUCGGGCGUggCGUGACGuccuGGGCa -3' miRNA: 3'- gagcGGAAGCCUGCG--GUACUGC----UCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 16214 | 0.69 | 0.407566 |
Target: 5'- gCUUGCCgaccCGaACGCCGUGACGucGGUc -3' miRNA: 3'- -GAGCGGaa--GCcUGCGGUACUGCu-CCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 9011 | 0.69 | 0.416944 |
Target: 5'- aUCGCCgUCGGcauugGCGCCGguaucGCuGAGGCg -3' miRNA: 3'- gAGCGGaAGCC-----UGCGGUac---UG-CUCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 26906 | 1.13 | 0.000306 |
Target: 5'- aCUCGCCUUCGGACGCCAUGACGAGGCg -3' miRNA: 3'- -GAGCGGAAGCCUGCGGUACUGCUCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 36795 | 0.67 | 0.527915 |
Target: 5'- --gGCCUg-GGGCGCCGucuccggcuccgUGACG-GGCu -3' miRNA: 3'- gagCGGAagCCUGCGGU------------ACUGCuCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 22958 | 0.68 | 0.475843 |
Target: 5'- gUCGCgCgucaCGGGCGUCAcGAUGAGcGCg -3' miRNA: 3'- gAGCG-Gaa--GCCUGCGGUaCUGCUC-CG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 37187 | 0.68 | 0.475843 |
Target: 5'- -gCGUCUUCGGuC-CCAUGGCGcccaGGGUa -3' miRNA: 3'- gaGCGGAAGCCuGcGGUACUGC----UCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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