miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8128 5' -56.7 NC_001978.2 + 304 0.71 0.305897
Target:  5'- gUCGCCUUCaGGuGCGCgGgcacACGGGGCg -3'
miRNA:   3'- gAGCGGAAG-CC-UGCGgUac--UGCUCCG- -5'
8128 5' -56.7 NC_001978.2 + 1755 0.68 0.455733
Target:  5'- -gUGUCggCGGACGCCG-GACGgcaacaGGGCu -3'
miRNA:   3'- gaGCGGaaGCCUGCGGUaCUGC------UCCG- -5'
8128 5' -56.7 NC_001978.2 + 2710 0.75 0.176643
Target:  5'- gCUCGCCgUUCacGGCGCUGUGAUGuGGCg -3'
miRNA:   3'- -GAGCGG-AAGc-CUGCGGUACUGCuCCG- -5'
8128 5' -56.7 NC_001978.2 + 3541 0.66 0.592926
Target:  5'- -gCGCCaugcCGGGCGCUGUGguuGAGGUa -3'
miRNA:   3'- gaGCGGaa--GCCUGCGGUACug-CUCCG- -5'
8128 5' -56.7 NC_001978.2 + 5389 0.69 0.416944
Target:  5'- uUCGCg-UCGGACGUCGUGA--AGGUc -3'
miRNA:   3'- gAGCGgaAGCCUGCGGUACUgcUCCG- -5'
8128 5' -56.7 NC_001978.2 + 8193 0.69 0.389211
Target:  5'- gCUCGaCUUCGGGuCGCgGUGACcguccGGGCu -3'
miRNA:   3'- -GAGCgGAAGCCU-GCGgUACUGc----UCCG- -5'
8128 5' -56.7 NC_001978.2 + 8255 0.68 0.426454
Target:  5'- -gCGCCcuucgCGGACGCCGUGACcuuaauGGa -3'
miRNA:   3'- gaGCGGaa---GCCUGCGGUACUGcu----CCg -5'
8128 5' -56.7 NC_001978.2 + 8318 0.71 0.290967
Target:  5'- aUgGCCcguaagUCGGACGUCGUGGCGGcaacuuacgaacGGCg -3'
miRNA:   3'- gAgCGGa-----AGCCUGCGGUACUGCU------------CCG- -5'
8128 5' -56.7 NC_001978.2 + 9011 0.69 0.416944
Target:  5'- aUCGCCgUCGGcauugGCGCCGguaucGCuGAGGCg -3'
miRNA:   3'- gAGCGGaAGCC-----UGCGGUac---UG-CUCCG- -5'
8128 5' -56.7 NC_001978.2 + 9073 0.67 0.538593
Target:  5'- cCUUGCCgcccagUUGGGCGCgAcuccGGCuGAGGCu -3'
miRNA:   3'- -GAGCGGa-----AGCCUGCGgUa---CUG-CUCCG- -5'
8128 5' -56.7 NC_001978.2 + 9437 0.69 0.389211
Target:  5'- -gCGCCUUCcuGGGCGCCAcGaACGAGa- -3'
miRNA:   3'- gaGCGGAAG--CCUGCGGUaC-UGCUCcg -5'
8128 5' -56.7 NC_001978.2 + 10123 0.66 0.571035
Target:  5'- gUCGCCUggGuGACGUCAaGcGCGAcGGCg -3'
miRNA:   3'- gAGCGGAagC-CUGCGGUaC-UGCU-CCG- -5'
8128 5' -56.7 NC_001978.2 + 10347 0.68 0.426454
Target:  5'- -cCGCCaUUCGGGCGCCcUGAaucauggacUGAGcGCc -3'
miRNA:   3'- gaGCGG-AAGCCUGCGGuACU---------GCUC-CG- -5'
8128 5' -56.7 NC_001978.2 + 11034 0.67 0.517317
Target:  5'- gUCGCCU--GGGCGCUgcgGACGucuccGGCg -3'
miRNA:   3'- gAGCGGAagCCUGCGGua-CUGCu----CCG- -5'
8128 5' -56.7 NC_001978.2 + 13460 0.67 0.538593
Target:  5'- gUCGCCgaagccauaUCGGAgcuUGCCGaagaUGACGGcGGCu -3'
miRNA:   3'- gAGCGGa--------AGCCU---GCGGU----ACUGCU-CCG- -5'
8128 5' -56.7 NC_001978.2 + 16214 0.69 0.407566
Target:  5'- gCUUGCCgaccCGaACGCCGUGACGucGGUc -3'
miRNA:   3'- -GAGCGGaa--GCcUGCGGUACUGCu-CCG- -5'
8128 5' -56.7 NC_001978.2 + 16744 0.67 0.506804
Target:  5'- uUCaGCCU--GGGCGCUacuggGUGACGuGGCu -3'
miRNA:   3'- gAG-CGGAagCCUGCGG-----UACUGCuCCG- -5'
8128 5' -56.7 NC_001978.2 + 22389 0.69 0.416944
Target:  5'- gUCGCCUUC-GACGucuuccagucgcCCAUGAucaggUGAGGCu -3'
miRNA:   3'- gAGCGGAAGcCUGC------------GGUACU-----GCUCCG- -5'
8128 5' -56.7 NC_001978.2 + 22885 0.68 0.475843
Target:  5'- uCUCGCgCUcaUCGuGACGcCCGUGACGcgcgacuaGGGUc -3'
miRNA:   3'- -GAGCG-GA--AGC-CUGC-GGUACUGC--------UCCG- -5'
8128 5' -56.7 NC_001978.2 + 22958 0.68 0.475843
Target:  5'- gUCGCgCgucaCGGGCGUCAcGAUGAGcGCg -3'
miRNA:   3'- gAGCG-Gaa--GCCUGCGGUaCUGCUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.