Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8128 | 5' | -56.7 | NC_001978.2 | + | 26906 | 1.13 | 0.000306 |
Target: 5'- aCUCGCCUUCGGACGCCAUGACGAGGCg -3' miRNA: 3'- -GAGCGGAAGCCUGCGGUACUGCUCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 2710 | 0.75 | 0.176643 |
Target: 5'- gCUCGCCgUUCacGGCGCUGUGAUGuGGCg -3' miRNA: 3'- -GAGCGG-AAGc-CUGCGGUACUGCuCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 33561 | 0.73 | 0.224827 |
Target: 5'- gUCGCCcuugUCGG-CGCCGUGACcgucGGGUg -3' miRNA: 3'- gAGCGGa---AGCCuGCGGUACUGc---UCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 36611 | 0.72 | 0.269653 |
Target: 5'- uCUCGCCgaagUCGGGC-CCGUGuacAUGaAGGCg -3' miRNA: 3'- -GAGCGGa---AGCCUGcGGUAC---UGC-UCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 31344 | 0.72 | 0.276615 |
Target: 5'- gUCGCCgUCGGcguugGCCGUGACGAacucgacguuGGCg -3' miRNA: 3'- gAGCGGaAGCCug---CGGUACUGCU----------CCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 8318 | 0.71 | 0.290967 |
Target: 5'- aUgGCCcguaagUCGGACGUCGUGGCGGcaacuuacgaacGGCg -3' miRNA: 3'- gAgCGGa-----AGCCUGCGGUACUGCU------------CCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 304 | 0.71 | 0.305897 |
Target: 5'- gUCGCCUUCaGGuGCGCgGgcacACGGGGCg -3' miRNA: 3'- gAGCGGAAG-CC-UGCGgUac--UGCUCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 33108 | 0.7 | 0.329379 |
Target: 5'- ---aCCUUCGGGCGUggCGUGACGuccuGGGCa -3' miRNA: 3'- gagcGGAAGCCUGCG--GUACUGC----UCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 29370 | 0.69 | 0.383811 |
Target: 5'- -cCGCCUUCgGGGCGCUgaacacgaucucaucGUGAauGGGCa -3' miRNA: 3'- gaGCGGAAG-CCUGCGG---------------UACUgcUCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 9437 | 0.69 | 0.389211 |
Target: 5'- -gCGCCUUCcuGGGCGCCAcGaACGAGa- -3' miRNA: 3'- gaGCGGAAG--CCUGCGGUaC-UGCUCcg -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 35528 | 0.69 | 0.389211 |
Target: 5'- -aCGCCguugcugCGGACGCCAguACGAcGCg -3' miRNA: 3'- gaGCGGaa-----GCCUGCGGUacUGCUcCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 8193 | 0.69 | 0.389211 |
Target: 5'- gCUCGaCUUCGGGuCGCgGUGACcguccGGGCu -3' miRNA: 3'- -GAGCgGAAGCCU-GCGgUACUGc----UCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 16214 | 0.69 | 0.407566 |
Target: 5'- gCUUGCCgaccCGaACGCCGUGACGucGGUc -3' miRNA: 3'- -GAGCGGaa--GCcUGCGGUACUGCu-CCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 22389 | 0.69 | 0.416944 |
Target: 5'- gUCGCCUUC-GACGucuuccagucgcCCAUGAucaggUGAGGCu -3' miRNA: 3'- gAGCGGAAGcCUGC------------GGUACU-----GCUCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 5389 | 0.69 | 0.416944 |
Target: 5'- uUCGCg-UCGGACGUCGUGA--AGGUc -3' miRNA: 3'- gAGCGgaAGCCUGCGGUACUgcUCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 9011 | 0.69 | 0.416944 |
Target: 5'- aUCGCCgUCGGcauugGCGCCGguaucGCuGAGGCg -3' miRNA: 3'- gAGCGGaAGCC-----UGCGGUac---UG-CUCCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 10347 | 0.68 | 0.426454 |
Target: 5'- -cCGCCaUUCGGGCGCCcUGAaucauggacUGAGcGCc -3' miRNA: 3'- gaGCGG-AAGCCUGCGGuACU---------GCUC-CG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 8255 | 0.68 | 0.426454 |
Target: 5'- -gCGCCcuucgCGGACGCCGUGACcuuaauGGa -3' miRNA: 3'- gaGCGGaa---GCCUGCGGUACUGcu----CCg -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 30772 | 0.68 | 0.455733 |
Target: 5'- -aCGaCCUUCGuGACGuUCGUGACGAccgcauGGCc -3' miRNA: 3'- gaGC-GGAAGC-CUGC-GGUACUGCU------CCG- -5' |
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8128 | 5' | -56.7 | NC_001978.2 | + | 1755 | 0.68 | 0.455733 |
Target: 5'- -gUGUCggCGGACGCCG-GACGgcaacaGGGCu -3' miRNA: 3'- gaGCGGaaGCCUGCGGUaCUGC------UCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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