miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8129 3' -59.3 NC_001978.2 + 26524 0.66 0.389211
Target:  5'- -aCGaGGUCGaCCAcGCCGUUCGCGa- -3'
miRNA:   3'- agGC-CCAGCgGGUcCGGUAAGCGUau -5'
8129 3' -59.3 NC_001978.2 + 30734 0.67 0.362715
Target:  5'- gUCGGGUCGCUgGGGaCCGUcaGCAc- -3'
miRNA:   3'- aGGCCCAGCGGgUCC-GGUAagCGUau -5'
8129 3' -59.3 NC_001978.2 + 13215 0.67 0.329379
Target:  5'- gCCGGaaCGCCCAGGCUGaa-GCGUGu -3'
miRNA:   3'- aGGCCcaGCGGGUCCGGUaagCGUAU- -5'
8129 3' -59.3 NC_001978.2 + 11094 0.67 0.321407
Target:  5'- gUCCGcagCGCCCAGGCgAcUUCGCGc- -3'
miRNA:   3'- -AGGCccaGCGGGUCCGgU-AAGCGUau -5'
8129 3' -59.3 NC_001978.2 + 25422 0.68 0.305897
Target:  5'- aCCGGuucgggcucgacGUCGCCCAGGCUGaggCGCu-- -3'
miRNA:   3'- aGGCC------------CAGCGGGUCCGGUaa-GCGuau -5'
8129 3' -59.3 NC_001978.2 + 9344 0.68 0.305897
Target:  5'- gUCGGcccaacuucGUCGCCCAGGaCCG-UCGCGa- -3'
miRNA:   3'- aGGCC---------CAGCGGGUCC-GGUaAGCGUau -5'
8129 3' -59.3 NC_001978.2 + 21736 0.69 0.243213
Target:  5'- aCCGGGUUGCCCAcuGCC-UUCaGCAc- -3'
miRNA:   3'- aGGCCCAGCGGGUc-CGGuAAG-CGUau -5'
8129 3' -59.3 NC_001978.2 + 11712 0.69 0.23695
Target:  5'- aCCGGGUCGUCCGGcGCCGgucccUGCc-- -3'
miRNA:   3'- aGGCCCAGCGGGUC-CGGUaa---GCGuau -5'
8129 3' -59.3 NC_001978.2 + 21596 0.7 0.230821
Target:  5'- -aCGGG-CGCUCAGGCg--UCGCGUAc -3'
miRNA:   3'- agGCCCaGCGGGUCCGguaAGCGUAU- -5'
8129 3' -59.3 NC_001978.2 + 24475 0.71 0.178575
Target:  5'- cCCGGcuucagcgcucgcacGUCGCCCAGGgCAggCGCAg- -3'
miRNA:   3'- aGGCC---------------CAGCGGGUCCgGUaaGCGUau -5'
8129 3' -59.3 NC_001978.2 + 27226 1.06 0.000388
Target:  5'- cUCCGGGUCGCCCAGGCCAUUCGCAUAc -3'
miRNA:   3'- -AGGCCCAGCGGGUCCGGUAAGCGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.