miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8135 3' -57.9 NC_001978.2 + 31014 1.07 0.000498
Target:  5'- uACAUACGUCACGCCGACCUGGGCGCAc -3'
miRNA:   3'- -UGUAUGCAGUGCGGCUGGACCCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 22043 0.78 0.072783
Target:  5'- cACGaAgGuUCGCGCCGACCUGGGCaGCGa -3'
miRNA:   3'- -UGUaUgC-AGUGCGGCUGGACCCG-CGU- -5'
8135 3' -57.9 NC_001978.2 + 10992 0.73 0.169927
Target:  5'- aACGUGCagacgaACGCCGACCcguucgcgauUGGGCGCGa -3'
miRNA:   3'- -UGUAUGcag---UGCGGCUGG----------ACCCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 7963 0.73 0.189451
Target:  5'- uGCGgGCGUCACGCCGucGCCcGGGUcgaGCAc -3'
miRNA:   3'- -UGUaUGCAGUGCGGC--UGGaCCCG---CGU- -5'
8135 3' -57.9 NC_001978.2 + 40259 0.72 0.210919
Target:  5'- cGC-UACGUCuuccgUGCCGuCCUGGGCGUc -3'
miRNA:   3'- -UGuAUGCAGu----GCGGCuGGACCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 35647 0.71 0.247022
Target:  5'- -----gGUCGCGCCGACgCUcagGGGCGCc -3'
miRNA:   3'- uguaugCAGUGCGGCUG-GA---CCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 25637 0.71 0.247022
Target:  5'- ---cAgGUCACGCC--CCUGGGCGCc -3'
miRNA:   3'- uguaUgCAGUGCGGcuGGACCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 9266 0.7 0.26692
Target:  5'- ---gACGUCGCGaCGGuCCUGGGCGaCGa -3'
miRNA:   3'- uguaUGCAGUGCgGCU-GGACCCGC-GU- -5'
8135 3' -57.9 NC_001978.2 + 26281 0.7 0.26692
Target:  5'- cGCGUGCGUCAgGagauucaCG-CCaUGGGCGCGg -3'
miRNA:   3'- -UGUAUGCAGUgCg------GCuGG-ACCCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 21222 0.7 0.280181
Target:  5'- ---cGCGaaGCGCuuaccggccuuguCGACCUGGGCGCGa -3'
miRNA:   3'- uguaUGCagUGCG-------------GCUGGACCCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 358 0.7 0.280893
Target:  5'- cACGacCGUCGCGCCGACCUGuuguCGCu -3'
miRNA:   3'- -UGUauGCAGUGCGGCUGGACcc--GCGu -5'
8135 3' -57.9 NC_001978.2 + 36064 0.7 0.298419
Target:  5'- cGCcgACGugcuacacgggccacUCAccCGCCGAcaCCUGGGCGCGc -3'
miRNA:   3'- -UGuaUGC---------------AGU--GCGGCU--GGACCCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 20724 0.69 0.305968
Target:  5'- ---aACGUCGuCGUCGgcaauccgcuucuucGCCUGGGCGUAg -3'
miRNA:   3'- uguaUGCAGU-GCGGC---------------UGGACCCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 15888 0.69 0.325478
Target:  5'- aGCAUgucaccaACGggCACGUCGGCCgacgGGGUGCc -3'
miRNA:   3'- -UGUA-------UGCa-GUGCGGCUGGa---CCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 16736 0.68 0.359438
Target:  5'- cGCAUaGCGgcaagCGCGCCGguuuccugcccaGCCUGGG-GCAg -3'
miRNA:   3'- -UGUA-UGCa----GUGCGGC------------UGGACCCgCGU- -5'
8135 3' -57.9 NC_001978.2 + 11284 0.68 0.359438
Target:  5'- aACGgucggACgGUCACGCUGACgCUugagguauacGGGCGCGa -3'
miRNA:   3'- -UGUa----UG-CAGUGCGGCUG-GA----------CCCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 9440 0.68 0.368087
Target:  5'- ------uUCGCGCCuuCCUGGGCGCc -3'
miRNA:   3'- uguaugcAGUGCGGcuGGACCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 20470 0.68 0.376879
Target:  5'- gGCG-ACGUCG-GCCGACC--GGCGCGa -3'
miRNA:   3'- -UGUaUGCAGUgCGGCUGGacCCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 19858 0.68 0.385811
Target:  5'- gACGUGCGcauUgGCGCCGugCcGGGgGCc -3'
miRNA:   3'- -UGUAUGC---AgUGCGGCugGaCCCgCGu -5'
8135 3' -57.9 NC_001978.2 + 16729 0.68 0.393969
Target:  5'- --uUGCGUCGa-CCGugcuucaGCCUGGGCGCu -3'
miRNA:   3'- uguAUGCAGUgcGGC-------UGGACCCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.