miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8135 3' -57.9 NC_001978.2 + 22043 0.78 0.072783
Target:  5'- cACGaAgGuUCGCGCCGACCUGGGCaGCGa -3'
miRNA:   3'- -UGUaUgC-AGUGCGGCUGGACCCG-CGU- -5'
8135 3' -57.9 NC_001978.2 + 23124 0.66 0.501994
Target:  5'- aGCGUgagACG-UACGCCGACgacaccgUUGGGCGUu -3'
miRNA:   3'- -UGUA---UGCaGUGCGGCUG-------GACCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 18314 0.66 0.482339
Target:  5'- cGCAcGCGcCGCGuuGAgUUGGGCGa- -3'
miRNA:   3'- -UGUaUGCaGUGCggCUgGACCCGCgu -5'
8135 3' -57.9 NC_001978.2 + 33775 0.66 0.472144
Target:  5'- ---gGCGUUcCGCgaagCGugCUGGGCGCu -3'
miRNA:   3'- uguaUGCAGuGCG----GCugGACCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 28037 0.66 0.472144
Target:  5'- -aGUGCGUUcuACGUCGACCcgucGGCGCc -3'
miRNA:   3'- ugUAUGCAG--UGCGGCUGGac--CCGCGu -5'
8135 3' -57.9 NC_001978.2 + 14876 0.66 0.462059
Target:  5'- -----gGUCACGCCGACgUaaucGGCGCGc -3'
miRNA:   3'- uguaugCAGUGCGGCUGgAc---CCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 9065 0.67 0.452089
Target:  5'- aACG-ACGUCcuUGCCGcCCaguUGGGCGCGa -3'
miRNA:   3'- -UGUaUGCAGu-GCGGCuGG---ACCCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 29383 0.67 0.421952
Target:  5'- gGCGUGCccGUCgucgccgACGCUGACCUaGGGgGCc -3'
miRNA:   3'- -UGUAUG--CAG-------UGCGGCUGGA-CCCgCGu -5'
8135 3' -57.9 NC_001978.2 + 12826 0.67 0.404089
Target:  5'- gACGUACGgaagCACGUCGGCggGuGGCGUc -3'
miRNA:   3'- -UGUAUGCa---GUGCGGCUGgaC-CCGCGu -5'
8135 3' -57.9 NC_001978.2 + 16729 0.68 0.393969
Target:  5'- --uUGCGUCGa-CCGugcuucaGCCUGGGCGCu -3'
miRNA:   3'- uguAUGCAGUgcGGC-------UGGACCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 10992 0.73 0.169927
Target:  5'- aACGUGCagacgaACGCCGACCcguucgcgauUGGGCGCGa -3'
miRNA:   3'- -UGUAUGcag---UGCGGCUGG----------ACCCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 9266 0.7 0.26692
Target:  5'- ---gACGUCGCGaCGGuCCUGGGCGaCGa -3'
miRNA:   3'- uguaUGCAGUGCgGCU-GGACCCGC-GU- -5'
8135 3' -57.9 NC_001978.2 + 26281 0.7 0.26692
Target:  5'- cGCGUGCGUCAgGagauucaCG-CCaUGGGCGCGg -3'
miRNA:   3'- -UGUAUGCAGUgCg------GCuGG-ACCCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 358 0.7 0.280893
Target:  5'- cACGacCGUCGCGCCGACCUGuuguCGCu -3'
miRNA:   3'- -UGUauGCAGUGCGGCUGGACcc--GCGu -5'
8135 3' -57.9 NC_001978.2 + 36064 0.7 0.298419
Target:  5'- cGCcgACGugcuacacgggccacUCAccCGCCGAcaCCUGGGCGCGc -3'
miRNA:   3'- -UGuaUGC---------------AGU--GCGGCU--GGACCCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 11284 0.68 0.359438
Target:  5'- aACGgucggACgGUCACGCUGACgCUugagguauacGGGCGCGa -3'
miRNA:   3'- -UGUa----UG-CAGUGCGGCUG-GA----------CCCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 19858 0.68 0.385811
Target:  5'- gACGUGCGcauUgGCGCCGugCcGGGgGCc -3'
miRNA:   3'- -UGUAUGC---AgUGCGGCugGaCCCgCGu -5'
8135 3' -57.9 NC_001978.2 + 31014 1.07 0.000498
Target:  5'- uACAUACGUCACGCCGACCUGGGCGCAc -3'
miRNA:   3'- -UGUAUGCAGUGCGGCUGGACCCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 13633 0.66 0.492639
Target:  5'- aACGga-GUCgACGCCGaACC-GGGCGUg -3'
miRNA:   3'- -UGUaugCAG-UGCGGC-UGGaCCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 17784 0.66 0.459056
Target:  5'- ---cGCGacaaGCGCCuuaccgaccuggguGACCUGGGCGCc -3'
miRNA:   3'- uguaUGCag--UGCGG--------------CUGGACCCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.