miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8135 3' -57.9 NC_001978.2 + 25637 0.71 0.247022
Target:  5'- ---cAgGUCACGCC--CCUGGGCGCc -3'
miRNA:   3'- uguaUgCAGUGCGGcuGGACCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 40259 0.72 0.210919
Target:  5'- cGC-UACGUCuuccgUGCCGuCCUGGGCGUc -3'
miRNA:   3'- -UGuAUGCAGu----GCGGCuGGACCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 7963 0.73 0.189451
Target:  5'- uGCGgGCGUCACGCCGucGCCcGGGUcgaGCAc -3'
miRNA:   3'- -UGUaUGCAGUGCGGC--UGGaCCCG---CGU- -5'
8135 3' -57.9 NC_001978.2 + 15888 0.69 0.325478
Target:  5'- aGCAUgucaccaACGggCACGUCGGCCgacgGGGUGCc -3'
miRNA:   3'- -UGUA-------UGCa-GUGCGGCUGGa---CCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 16736 0.68 0.359438
Target:  5'- cGCAUaGCGgcaagCGCGCCGguuuccugcccaGCCUGGG-GCAg -3'
miRNA:   3'- -UGUA-UGCa----GUGCGGC------------UGGACCCgCGU- -5'
8135 3' -57.9 NC_001978.2 + 9440 0.68 0.368087
Target:  5'- ------uUCGCGCCuuCCUGGGCGCc -3'
miRNA:   3'- uguaugcAGUGCGGcuGGACCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 20470 0.68 0.376879
Target:  5'- gGCG-ACGUCG-GCCGACC--GGCGCGa -3'
miRNA:   3'- -UGUaUGCAGUgCGGCUGGacCCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 13729 0.68 0.394882
Target:  5'- cCGU-UGUCgGCGCCGACCgcauaGGCGCGa -3'
miRNA:   3'- uGUAuGCAG-UGCGGCUGGac---CCGCGU- -5'
8135 3' -57.9 NC_001978.2 + 30696 0.67 0.413431
Target:  5'- cGCA-ACGUC-CGCCGGagucgucucgcCCUGGGUgGCAa -3'
miRNA:   3'- -UGUaUGCAGuGCGGCU-----------GGACCCG-CGU- -5'
8135 3' -57.9 NC_001978.2 + 17784 0.66 0.459056
Target:  5'- ---cGCGacaaGCGCCuuaccgaccuggguGACCUGGGCGCc -3'
miRNA:   3'- uguaUGCag--UGCGG--------------CUGGACCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 13633 0.66 0.492639
Target:  5'- aACGga-GUCgACGCCGaACC-GGGCGUg -3'
miRNA:   3'- -UGUaugCAG-UGCGGC-UGGaCCCGCGu -5'
8135 3' -57.9 NC_001978.2 + 320 0.66 0.503039
Target:  5'- cCAUACGUCcuUGCCGgucGCCUucaGGuGCGCGg -3'
miRNA:   3'- uGUAUGCAGu-GCGGC---UGGA---CC-CGCGU- -5'
8135 3' -57.9 NC_001978.2 + 31014 1.07 0.000498
Target:  5'- uACAUACGUCACGCCGACCUGGGCGCAc -3'
miRNA:   3'- -UGUAUGCAGUGCGGCUGGACCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.