miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8147 3' -48.7 NC_001978.2 + 37068 1.14 0.001712
Target:  5'- gGUAACGAAAAAUGCCCCCUACCGACCa -3'
miRNA:   3'- -CAUUGCUUUUUACGGGGGAUGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 20755 0.78 0.364514
Target:  5'- -gAACGAGGGAguugugcGCCCCCUGCCGcUCa -3'
miRNA:   3'- caUUGCUUUUUa------CGGGGGAUGGCuGG- -5'
8147 3' -48.7 NC_001978.2 + 30578 0.77 0.392778
Target:  5'- ---uCGAuGAGUGCgCCCCgACCGACCu -3'
miRNA:   3'- cauuGCUuUUUACG-GGGGaUGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 36967 0.75 0.496488
Target:  5'- ---gUGAGAcGUGCCCCCgACUGACUg -3'
miRNA:   3'- cauuGCUUUuUACGGGGGaUGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 39506 0.74 0.564286
Target:  5'- ---cCGGGAAAgcccuugccgcGCCCCCUGCCGuCCa -3'
miRNA:   3'- cauuGCUUUUUa----------CGGGGGAUGGCuGG- -5'
8147 3' -48.7 NC_001978.2 + 8891 0.74 0.587475
Target:  5'- -cGGCGcucAGUGCCCCCgcuucgcccCCGACCg -3'
miRNA:   3'- caUUGCuuuUUACGGGGGau-------GGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 2966 0.73 0.610833
Target:  5'- ---cUGggGAGUGCCCCCgcCCGAa- -3'
miRNA:   3'- cauuGCuuUUUACGGGGGauGGCUgg -5'
8147 3' -48.7 NC_001978.2 + 13113 0.73 0.622549
Target:  5'- -cGACGGuaGGAAUGCCgCUcgacgCUGCCGACCc -3'
miRNA:   3'- caUUGCU--UUUUACGG-GG-----GAUGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 37850 0.73 0.622549
Target:  5'- -gGGCGAA--GUGCCCCUUGUCGGCg -3'
miRNA:   3'- caUUGCUUuuUACGGGGGAUGGCUGg -5'
8147 3' -48.7 NC_001978.2 + 9986 0.72 0.681032
Target:  5'- -aAugGGAAGgaccGUGCCCCCgaugaagUCGACCa -3'
miRNA:   3'- caUugCUUUU----UACGGGGGau-----GGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 29856 0.7 0.7818
Target:  5'- -aAGCGggGgcgacccuuccgGGUGCCgacUCCUGCCGACg -3'
miRNA:   3'- caUUGCuuU------------UUACGG---GGGAUGGCUGg -5'
8147 3' -48.7 NC_001978.2 + 20950 0.7 0.802607
Target:  5'- cGUAGCGggGAA-GCUcgauuCCCUGCCcGGCg -3'
miRNA:   3'- -CAUUGCuuUUUaCGG-----GGGAUGG-CUGg -5'
8147 3' -48.7 NC_001978.2 + 36036 0.7 0.802607
Target:  5'- cUAGCGGAAGcccugggcGUGCCCUacucGCCGACg -3'
miRNA:   3'- cAUUGCUUUU--------UACGGGGga--UGGCUGg -5'
8147 3' -48.7 NC_001978.2 + 33966 0.7 0.812713
Target:  5'- ---cCGggGucuUGCCCUUgucugACCGACCg -3'
miRNA:   3'- cauuGCuuUuu-ACGGGGGa----UGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 32913 0.7 0.812713
Target:  5'- -gAGCcGGucGUGCCCCCUGCC-AUCg -3'
miRNA:   3'- caUUGcUUuuUACGGGGGAUGGcUGG- -5'
8147 3' -48.7 NC_001978.2 + 9626 0.7 0.812713
Target:  5'- aUGACGAAGGccauUGCCCaggGCgGACCg -3'
miRNA:   3'- cAUUGCUUUUu---ACGGGggaUGgCUGG- -5'
8147 3' -48.7 NC_001978.2 + 26869 0.69 0.831312
Target:  5'- -aAGCGcggcaaggucguuGGGAAUGCCCCC-GCCGuuGCCc -3'
miRNA:   3'- caUUGC-------------UUUUUACGGGGGaUGGC--UGG- -5'
8147 3' -48.7 NC_001978.2 + 40172 0.69 0.840761
Target:  5'- -gGGCGuucccUGCCCCCUGCCcguagucGACUu -3'
miRNA:   3'- caUUGCuuuuuACGGGGGAUGG-------CUGG- -5'
8147 3' -48.7 NC_001978.2 + 39696 0.69 0.841692
Target:  5'- -cAACGAAcuugucGAGUGCCgCCaUGCUGACg -3'
miRNA:   3'- caUUGCUU------UUUACGGgGG-AUGGCUGg -5'
8147 3' -48.7 NC_001978.2 + 37928 0.69 0.850867
Target:  5'- --uACGGGAcggcGCCCCC-GCCGACa -3'
miRNA:   3'- cauUGCUUUuua-CGGGGGaUGGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.