miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8147 3' -48.7 NC_001978.2 + 36967 0.75 0.496488
Target:  5'- ---gUGAGAcGUGCCCCCgACUGACUg -3'
miRNA:   3'- cauuGCUUUuUACGGGGGaUGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 31191 0.68 0.876791
Target:  5'- -cAACGAAAcggagccccacAGUGCagaccuucaCCCUuCCGACCg -3'
miRNA:   3'- caUUGCUUU-----------UUACGg--------GGGAuGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 30443 0.67 0.907322
Target:  5'- -gGACGccGAcgGuUCCCUUGCCGACa -3'
miRNA:   3'- caUUGCuuUUuaC-GGGGGAUGGCUGg -5'
8147 3' -48.7 NC_001978.2 + 18012 0.67 0.907322
Target:  5'- ---cUGAAGGGUGCUCCgCgUACCGGuCCg -3'
miRNA:   3'- cauuGCUUUUUACGGGG-G-AUGGCU-GG- -5'
8147 3' -48.7 NC_001978.2 + 4114 0.67 0.912165
Target:  5'- -cGGCGAAGAGccggagccugagccUGCCCCCgcucccCCaGCCa -3'
miRNA:   3'- caUUGCUUUUU--------------ACGGGGGau----GGcUGG- -5'
8147 3' -48.7 NC_001978.2 + 24128 0.67 0.913521
Target:  5'- --uACGGAAAGcuaGUUCCCUuccuucagguucaGCCGACCg -3'
miRNA:   3'- cauUGCUUUUUa--CGGGGGA-------------UGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 5858 0.67 0.927002
Target:  5'- -aGACGGAcGAcgGCaUgCCUGCCGACa -3'
miRNA:   3'- caUUGCUU-UUuaCG-GgGGAUGGCUGg -5'
8147 3' -48.7 NC_001978.2 + 34102 0.66 0.932936
Target:  5'- gGgcACGGGuuacaacGGUGCCCCUU-CCGGCg -3'
miRNA:   3'- -CauUGCUUu------UUACGGGGGAuGGCUGg -5'
8147 3' -48.7 NC_001978.2 + 25597 0.66 0.953559
Target:  5'- -gAGCGgcAAGUGCCCCggucguugGCUGAgCCu -3'
miRNA:   3'- caUUGCuuUUUACGGGGga------UGGCU-GG- -5'
8147 3' -48.7 NC_001978.2 + 19087 0.68 0.873479
Target:  5'- cUAGCaccuucgGCCCCCgccgACUGACCu -3'
miRNA:   3'- cAUUGcuuuuuaCGGGGGa---UGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 35575 0.68 0.868426
Target:  5'- ---cCGGAGAcgGCgCCCCUgagcgucgGCgCGACCg -3'
miRNA:   3'- cauuGCUUUUuaCG-GGGGA--------UG-GCUGG- -5'
8147 3' -48.7 NC_001978.2 + 13113 0.73 0.622549
Target:  5'- -cGACGGuaGGAAUGCCgCUcgacgCUGCCGACCc -3'
miRNA:   3'- caUUGCU--UUUUACGG-GG-----GAUGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 37850 0.73 0.622549
Target:  5'- -gGGCGAA--GUGCCCCUUGUCGGCg -3'
miRNA:   3'- caUUGCUUuuUACGGGGGAUGGCUGg -5'
8147 3' -48.7 NC_001978.2 + 36036 0.7 0.802607
Target:  5'- cUAGCGGAAGcccugggcGUGCCCUacucGCCGACg -3'
miRNA:   3'- cAUUGCUUUU--------UACGGGGga--UGGCUGg -5'
8147 3' -48.7 NC_001978.2 + 32913 0.7 0.812713
Target:  5'- -gAGCcGGucGUGCCCCCUGCC-AUCg -3'
miRNA:   3'- caUUGcUUuuUACGGGGGAUGGcUGG- -5'
8147 3' -48.7 NC_001978.2 + 33966 0.7 0.812713
Target:  5'- ---cCGggGucuUGCCCUUgucugACCGACCg -3'
miRNA:   3'- cauuGCuuUuu-ACGGGGGa----UGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 9626 0.7 0.812713
Target:  5'- aUGACGAAGGccauUGCCCaggGCgGACCg -3'
miRNA:   3'- cAUUGCUUUUu---ACGGGggaUGgCUGG- -5'
8147 3' -48.7 NC_001978.2 + 35527 0.69 0.850867
Target:  5'- ---cCGGAGAcgGCauaCCCgCUGCCGACUc -3'
miRNA:   3'- cauuGCUUUUuaCG---GGG-GAUGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 15486 0.68 0.859781
Target:  5'- -cGACGuc----G-CCCCUGCCGACCc -3'
miRNA:   3'- caUUGCuuuuuaCgGGGGAUGGCUGG- -5'
8147 3' -48.7 NC_001978.2 + 37068 1.14 0.001712
Target:  5'- gGUAACGAAAAAUGCCCCCUACCGACCa -3'
miRNA:   3'- -CAUUGCUUUUUACGGGGGAUGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.