Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8147 | 3' | -48.7 | NC_001978.2 | + | 20950 | 0.7 | 0.802607 |
Target: 5'- cGUAGCGggGAA-GCUcgauuCCCUGCCcGGCg -3' miRNA: 3'- -CAUUGCuuUUUaCGG-----GGGAUGG-CUGg -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 29856 | 0.7 | 0.7818 |
Target: 5'- -aAGCGggGgcgacccuuccgGGUGCCgacUCCUGCCGACg -3' miRNA: 3'- caUUGCuuU------------UUACGG---GGGAUGGCUGg -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 9986 | 0.72 | 0.681032 |
Target: 5'- -aAugGGAAGgaccGUGCCCCCgaugaagUCGACCa -3' miRNA: 3'- caUugCUUUU----UACGGGGGau-----GGCUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 2966 | 0.73 | 0.610833 |
Target: 5'- ---cUGggGAGUGCCCCCgcCCGAa- -3' miRNA: 3'- cauuGCuuUUUACGGGGGauGGCUgg -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 8891 | 0.74 | 0.587475 |
Target: 5'- -cGGCGcucAGUGCCCCCgcuucgcccCCGACCg -3' miRNA: 3'- caUUGCuuuUUACGGGGGau-------GGCUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 39506 | 0.74 | 0.564286 |
Target: 5'- ---cCGGGAAAgcccuugccgcGCCCCCUGCCGuCCa -3' miRNA: 3'- cauuGCUUUUUa----------CGGGGGAUGGCuGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 30578 | 0.77 | 0.392778 |
Target: 5'- ---uCGAuGAGUGCgCCCCgACCGACCu -3' miRNA: 3'- cauuGCUuUUUACG-GGGGaUGGCUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 20755 | 0.78 | 0.364514 |
Target: 5'- -gAACGAGGGAguugugcGCCCCCUGCCGcUCa -3' miRNA: 3'- caUUGCUUUUUa------CGGGGGAUGGCuGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 37068 | 1.14 | 0.001712 |
Target: 5'- gGUAACGAAAAAUGCCCCCUACCGACCa -3' miRNA: 3'- -CAUUGCUUUUUACGGGGGAUGGCUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 40172 | 0.69 | 0.840761 |
Target: 5'- -gGGCGuucccUGCCCCCUGCCcguagucGACUu -3' miRNA: 3'- caUUGCuuuuuACGGGGGAUGG-------CUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 39696 | 0.69 | 0.841692 |
Target: 5'- -cAACGAAcuugucGAGUGCCgCCaUGCUGACg -3' miRNA: 3'- caUUGCUU------UUUACGGgGG-AUGGCUGg -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 38622 | 0.67 | 0.920755 |
Target: 5'- -cGGCGcuucgcuGAAAUGCCCgacgaaCCUgaACCGGCCc -3' miRNA: 3'- caUUGCu------UUUUACGGG------GGA--UGGCUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 23728 | 0.67 | 0.914194 |
Target: 5'- uUGGCGAGcacagcGCCaCCCuUGCCGACg -3' miRNA: 3'- cAUUGCUUuuua--CGG-GGG-AUGGCUGg -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 12422 | 0.67 | 0.907322 |
Target: 5'- aUGGCGAu---UGCCgCCgcguuguCCGGCCg -3' miRNA: 3'- cAUUGCUuuuuACGGgGGau-----GGCUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 17784 | 0.68 | 0.892656 |
Target: 5'- --cGCGAcaa--GCgCCUUACCGACCu -3' miRNA: 3'- cauUGCUuuuuaCGgGGGAUGGCUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 12381 | 0.68 | 0.88487 |
Target: 5'- -cGGCGAAGcg-GCaggcguaCCCUGCaCGACCu -3' miRNA: 3'- caUUGCUUUuuaCGg------GGGAUG-GCUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 21549 | 0.68 | 0.868426 |
Target: 5'- -cGGCGGAGucgaGCCCCC-ACCGggaaGCCu -3' miRNA: 3'- caUUGCUUUuua-CGGGGGaUGGC----UGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 365 | 0.68 | 0.859781 |
Target: 5'- cGUGuCGggGGAguagGCgCCCaUACCGGCUu -3' miRNA: 3'- -CAUuGCuuUUUa---CGgGGG-AUGGCUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 29051 | 0.68 | 0.859781 |
Target: 5'- cGUGGCGAcucc-GCCCCCguagaccuUGCCGAauCCg -3' miRNA: 3'- -CAUUGCUuuuuaCGGGGG--------AUGGCU--GG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 37928 | 0.69 | 0.850867 |
Target: 5'- --uACGGGAcggcGCCCCC-GCCGACa -3' miRNA: 3'- cauUGCUUUuua-CGGGGGaUGGCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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