Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8147 | 3' | -48.7 | NC_001978.2 | + | 37928 | 0.69 | 0.850867 |
Target: 5'- --uACGGGAcggcGCCCCC-GCCGACa -3' miRNA: 3'- cauUGCUUUuua-CGGGGGaUGGCUGg -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 35527 | 0.69 | 0.850867 |
Target: 5'- ---cCGGAGAcgGCauaCCCgCUGCCGACUc -3' miRNA: 3'- cauuGCUUUUuaCG---GGG-GAUGGCUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 40172 | 0.69 | 0.840761 |
Target: 5'- -gGGCGuucccUGCCCCCUGCCcguagucGACUu -3' miRNA: 3'- caUUGCuuuuuACGGGGGAUGG-------CUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 26869 | 0.69 | 0.831312 |
Target: 5'- -aAGCGcggcaaggucguuGGGAAUGCCCCC-GCCGuuGCCc -3' miRNA: 3'- caUUGC-------------UUUUUACGGGGGaUGGC--UGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 39696 | 0.69 | 0.841692 |
Target: 5'- -cAACGAAcuugucGAGUGCCgCCaUGCUGACg -3' miRNA: 3'- caUUGCUU------UUUACGGgGG-AUGGCUGg -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 20950 | 0.7 | 0.802607 |
Target: 5'- cGUAGCGggGAA-GCUcgauuCCCUGCCcGGCg -3' miRNA: 3'- -CAUUGCuuUUUaCGG-----GGGAUGG-CUGg -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 29856 | 0.7 | 0.7818 |
Target: 5'- -aAGCGggGgcgacccuuccgGGUGCCgacUCCUGCCGACg -3' miRNA: 3'- caUUGCuuU------------UUACGG---GGGAUGGCUGg -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 33966 | 0.7 | 0.812713 |
Target: 5'- ---cCGggGucuUGCCCUUgucugACCGACCg -3' miRNA: 3'- cauuGCuuUuu-ACGGGGGa----UGGCUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 9626 | 0.7 | 0.812713 |
Target: 5'- aUGACGAAGGccauUGCCCaggGCgGACCg -3' miRNA: 3'- cAUUGCUUUUu---ACGGGggaUGgCUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 32913 | 0.7 | 0.812713 |
Target: 5'- -gAGCcGGucGUGCCCCCUGCC-AUCg -3' miRNA: 3'- caUUGcUUuuUACGGGGGAUGGcUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 36036 | 0.7 | 0.802607 |
Target: 5'- cUAGCGGAAGcccugggcGUGCCCUacucGCCGACg -3' miRNA: 3'- cAUUGCUUUU--------UACGGGGga--UGGCUGg -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 9986 | 0.72 | 0.681032 |
Target: 5'- -aAugGGAAGgaccGUGCCCCCgaugaagUCGACCa -3' miRNA: 3'- caUugCUUUU----UACGGGGGau-----GGCUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 37850 | 0.73 | 0.622549 |
Target: 5'- -gGGCGAA--GUGCCCCUUGUCGGCg -3' miRNA: 3'- caUUGCUUuuUACGGGGGAUGGCUGg -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 13113 | 0.73 | 0.622549 |
Target: 5'- -cGACGGuaGGAAUGCCgCUcgacgCUGCCGACCc -3' miRNA: 3'- caUUGCU--UUUUACGG-GG-----GAUGGCUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 2966 | 0.73 | 0.610833 |
Target: 5'- ---cUGggGAGUGCCCCCgcCCGAa- -3' miRNA: 3'- cauuGCuuUUUACGGGGGauGGCUgg -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 8891 | 0.74 | 0.587475 |
Target: 5'- -cGGCGcucAGUGCCCCCgcuucgcccCCGACCg -3' miRNA: 3'- caUUGCuuuUUACGGGGGau-------GGCUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 39506 | 0.74 | 0.564286 |
Target: 5'- ---cCGGGAAAgcccuugccgcGCCCCCUGCCGuCCa -3' miRNA: 3'- cauuGCUUUUUa----------CGGGGGAUGGCuGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 36967 | 0.75 | 0.496488 |
Target: 5'- ---gUGAGAcGUGCCCCCgACUGACUg -3' miRNA: 3'- cauuGCUUUuUACGGGGGaUGGCUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 30578 | 0.77 | 0.392778 |
Target: 5'- ---uCGAuGAGUGCgCCCCgACCGACCu -3' miRNA: 3'- cauuGCUuUUUACG-GGGGaUGGCUGG- -5' |
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8147 | 3' | -48.7 | NC_001978.2 | + | 20755 | 0.78 | 0.364514 |
Target: 5'- -gAACGAGGGAguugugcGCCCCCUGCCGcUCa -3' miRNA: 3'- caUUGCUUUUUa------CGGGGGAUGGCuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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