miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8148 3' -63.7 NC_001978.2 + 22024 0.66 0.279029
Target:  5'- cUGGGGCGGCucGCCgguacacgaagguuCgCGCCGACcuGGg -3'
miRNA:   3'- uGCCCUGCCG--CGG--------------GgGCGGCUGuuCC- -5'
8148 3' -63.7 NC_001978.2 + 19410 0.66 0.273684
Target:  5'- uCGGGACGuaGCGCUCcgaugcccgguugCCGCCGcACGccGGGg -3'
miRNA:   3'- uGCCCUGC--CGCGGG-------------GGCGGC-UGU--UCC- -5'
8148 3' -63.7 NC_001978.2 + 27508 0.66 0.267768
Target:  5'- aGCGGcGGCaGGCGCgUCagcgaacuucaCGCCGACAAGc -3'
miRNA:   3'- -UGCC-CUG-CCGCGgGG-----------GCGGCUGUUCc -5'
8148 3' -63.7 NC_001978.2 + 12908 0.66 0.267768
Target:  5'- cGCGauACGGCcgacGCCaCCCGCCGACGu-- -3'
miRNA:   3'- -UGCccUGCCG----CGG-GGGCGGCUGUucc -5'
8148 3' -63.7 NC_001978.2 + 16180 0.66 0.261318
Target:  5'- aACGGGAau-CGCCCCgaCGUCGGCAGcGGc -3'
miRNA:   3'- -UGCCCUgccGCGGGG--GCGGCUGUU-CC- -5'
8148 3' -63.7 NC_001978.2 + 19495 0.66 0.26068
Target:  5'- cGCGGGucACGGUucaggcgcucuucGCgCUCCGCCucagcGGCAAGGa -3'
miRNA:   3'- -UGCCC--UGCCG-------------CG-GGGGCGG-----CUGUUCC- -5'
8148 3' -63.7 NC_001978.2 + 21121 0.67 0.251261
Target:  5'- gACGGccGACGcgcugaaggugauucGCGCCCagGUCGACAAGGc -3'
miRNA:   3'- -UGCC--CUGC---------------CGCGGGggCGGCUGUUCC- -5'
8148 3' -63.7 NC_001978.2 + 23187 0.67 0.242724
Target:  5'- aGCGGGGCaaGGuCGUUCCCGUcgcgcuCGACAAGu -3'
miRNA:   3'- -UGCCCUG--CC-GCGGGGGCG------GCUGUUCc -5'
8148 3' -63.7 NC_001978.2 + 8019 0.67 0.242724
Target:  5'- aGCGGaACGuGCGCgcgCUCCG-CGACAAGGa -3'
miRNA:   3'- -UGCCcUGC-CGCG---GGGGCgGCUGUUCC- -5'
8148 3' -63.7 NC_001978.2 + 18458 0.67 0.23095
Target:  5'- cCGGGAagucCGGCuucacgGCCguagcgaCGCCGACAAGGg -3'
miRNA:   3'- uGCCCU----GCCG------CGGgg-----GCGGCUGUUCC- -5'
8148 3' -63.7 NC_001978.2 + 16556 0.67 0.219661
Target:  5'- uUGGGGCGGCGUUUCgGCUGACc--- -3'
miRNA:   3'- uGCCCUGCCGCGGGGgCGGCUGuucc -5'
8148 3' -63.7 NC_001978.2 + 30440 0.68 0.214195
Target:  5'- cGCGGacgccGACGGUuCCCuuGCCGACAc-- -3'
miRNA:   3'- -UGCC-----CUGCCGcGGGggCGGCUGUucc -5'
8148 3' -63.7 NC_001978.2 + 36658 0.68 0.208846
Target:  5'- aGCGGGAagcccUGaGCGCCCCUgaGCCGGuCGcGGa -3'
miRNA:   3'- -UGCCCU-----GC-CGCGGGGG--CGGCU-GUuCC- -5'
8148 3' -63.7 NC_001978.2 + 24068 0.68 0.203613
Target:  5'- uGCGGGAaucGCGCCCgugCGuCCGACGGGa -3'
miRNA:   3'- -UGCCCUgc-CGCGGGg--GC-GGCUGUUCc -5'
8148 3' -63.7 NC_001978.2 + 6100 0.68 0.200528
Target:  5'- aGCGGGAgUGaccgucagaaccuucGCGCCCCgggCGUCGACAAGa -3'
miRNA:   3'- -UGCCCU-GC---------------CGCGGGG---GCGGCUGUUCc -5'
8148 3' -63.7 NC_001978.2 + 37606 0.68 0.193487
Target:  5'- cGCGGGcuucccAgGuGCGCCCCCGCuCGACu--- -3'
miRNA:   3'- -UGCCC------UgC-CGCGGGGGCG-GCUGuucc -5'
8148 3' -63.7 NC_001978.2 + 39850 0.68 0.193487
Target:  5'- -aGGGcguCGGCGCgCUCCGCa-ACAAGGu -3'
miRNA:   3'- ugCCCu--GCCGCG-GGGGCGgcUGUUCC- -5'
8148 3' -63.7 NC_001978.2 + 8998 0.69 0.183805
Target:  5'- uGCGGG-UGGCGCUaucgCCGUCGGCAuuGGc -3'
miRNA:   3'- -UGCCCuGCCGCGGg---GGCGGCUGUu-CC- -5'
8148 3' -63.7 NC_001978.2 + 18036 0.69 0.170085
Target:  5'- cCGGucCgGGUGCCCaguggacgaaCGCCGACAAGGc -3'
miRNA:   3'- uGCCcuG-CCGCGGGg---------GCGGCUGUUCC- -5'
8148 3' -63.7 NC_001978.2 + 16123 0.69 0.170085
Target:  5'- uCGGGGCGauuCCCgUUGCCGACAAGGg -3'
miRNA:   3'- uGCCCUGCcgcGGG-GGCGGCUGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.