miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8148 3' -63.7 NC_001978.2 + 282 0.71 0.123972
Target:  5'- cACGGGGCGcuCGaCCCUCGUacaCGACGGGGg -3'
miRNA:   3'- -UGCCCUGCc-GC-GGGGGCG---GCUGUUCC- -5'
8148 3' -63.7 NC_001978.2 + 9060 0.71 0.117514
Target:  5'- gACGGcGAUaGCGCCaCCCGCa-GCAAGGg -3'
miRNA:   3'- -UGCC-CUGcCGCGG-GGGCGgcUGUUCC- -5'
8148 3' -63.7 NC_001978.2 + 4449 0.72 0.099976
Target:  5'- cGCaGcGACGGCGCCCCUGCCc-CAGGa -3'
miRNA:   3'- -UGcC-CUGCCGCGGGGGCGGcuGUUCc -5'
8148 3' -63.7 NC_001978.2 + 1058 0.72 0.097304
Target:  5'- cCGGGuCGuCGCCCCCGCCGAgacucccgcCGAGa -3'
miRNA:   3'- uGCCCuGCcGCGGGGGCGGCU---------GUUCc -5'
8148 3' -63.7 NC_001978.2 + 34105 0.73 0.089688
Target:  5'- cACGGGuuacaACGGUGCCCCUuCCGGCGugcccGGGu -3'
miRNA:   3'- -UGCCC-----UGCCGCGGGGGcGGCUGU-----UCC- -5'
8148 3' -63.7 NC_001978.2 + 29852 0.73 0.087277
Target:  5'- -gGGGGCgacccuuccgGGUGCCgacuCCUGCCGACGGGGg -3'
miRNA:   3'- ugCCCUG----------CCGCGG----GGGCGGCUGUUCC- -5'
8148 3' -63.7 NC_001978.2 + 17525 0.73 0.084928
Target:  5'- uGCGGG-CGGCuccGUCUCCGCCGACccGGa -3'
miRNA:   3'- -UGCCCuGCCG---CGGGGGCGGCUGuuCC- -5'
8148 3' -63.7 NC_001978.2 + 35575 0.74 0.075498
Target:  5'- cCGGaGACGGCGCCCCugagCGUCGGCGcgaccgaagaccccGGGa -3'
miRNA:   3'- uGCC-CUGCCGCGGGG----GCGGCUGU--------------UCC- -5'
8148 3' -63.7 NC_001978.2 + 29151 0.75 0.066341
Target:  5'- cACGGGuCGGCGCCUgCCGCuCGACcGGa -3'
miRNA:   3'- -UGCCCuGCCGCGGG-GGCG-GCUGuUCc -5'
8148 3' -63.7 NC_001978.2 + 37847 0.75 0.057777
Target:  5'- gUGGGGCGaaGUGCCCCuUGUCGGCGGGGg -3'
miRNA:   3'- uGCCCUGC--CGCGGGG-GCGGCUGUUCC- -5'
8148 3' -63.7 NC_001978.2 + 5859 0.76 0.053163
Target:  5'- gACGGacGACGGCaUgCCUGCCGACAAGGu -3'
miRNA:   3'- -UGCC--CUGCCGcGgGGGCGGCUGUUCC- -5'
8148 3' -63.7 NC_001978.2 + 36735 0.76 0.050289
Target:  5'- cCGGaGACGGCGCCCCagGCCGuuCAGGa -3'
miRNA:   3'- uGCC-CUGCCGCGGGGg-CGGCu-GUUCc -5'
8148 3' -63.7 NC_001978.2 + 37928 1.09 0.000125
Target:  5'- uACGGGACGGCGCCCCCGCCGACAAGGg -3'
miRNA:   3'- -UGCCCUGCCGCGGGGGCGGCUGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.