miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8153 3' -54 NC_001978.2 + 40965 1.08 0.000926
Target:  5'- cCAGUAGCGCAAAGCGUCGAGCACGCAc -3'
miRNA:   3'- -GUCAUCGCGUUUCGCAGCUCGUGCGU- -5'
8153 3' -54 NC_001978.2 + 24000 0.79 0.112347
Target:  5'- gUAGgaauGC-CGAAGCGUCGAGCACGCu -3'
miRNA:   3'- -GUCau--CGcGUUUCGCAGCUCGUGCGu -5'
8153 3' -54 NC_001978.2 + 30782 0.79 0.119118
Target:  5'- aCGGcGGCGUgaaggacggcaAGGGCGUCGAGCACGUAc -3'
miRNA:   3'- -GUCaUCGCG-----------UUUCGCAGCUCGUGCGU- -5'
8153 3' -54 NC_001978.2 + 6238 0.77 0.154522
Target:  5'- ---aAGCGCGGAGUcgucaagaccGUCGAGCGCGCGa -3'
miRNA:   3'- gucaUCGCGUUUCG----------CAGCUCGUGCGU- -5'
8153 3' -54 NC_001978.2 + 30667 0.77 0.163591
Target:  5'- gGGUGGCaaGCucAAGCGcaUCGAGCACGCAc -3'
miRNA:   3'- gUCAUCG--CGu-UUCGC--AGCUCGUGCGU- -5'
8153 3' -54 NC_001978.2 + 23933 0.75 0.234917
Target:  5'- aCAGUGGCGCcuucacGGCGUCGucagaagcGGUGCGCAu -3'
miRNA:   3'- -GUCAUCGCGuu----UCGCAGC--------UCGUGCGU- -5'
8153 3' -54 NC_001978.2 + 33112 0.74 0.268661
Target:  5'- gCAGUAGCGCAcGGGCGgcuucgCGGGCuuGCu -3'
miRNA:   3'- -GUCAUCGCGU-UUCGCa-----GCUCGugCGu -5'
8153 3' -54 NC_001978.2 + 38438 0.73 0.306208
Target:  5'- uCAGUcGCGCGAGcGCGagaauUCGAGCGCaGCAa -3'
miRNA:   3'- -GUCAuCGCGUUU-CGC-----AGCUCGUG-CGU- -5'
8153 3' -54 NC_001978.2 + 27318 0.72 0.339047
Target:  5'- gCGG-AGuCGuCGGcAGCGUCGAGCACGCc -3'
miRNA:   3'- -GUCaUC-GC-GUU-UCGCAGCUCGUGCGu -5'
8153 3' -54 NC_001978.2 + 38878 0.71 0.365307
Target:  5'- ----uGUGCGAcGCGUCGAGC-CGCAu -3'
miRNA:   3'- gucauCGCGUUuCGCAGCUCGuGCGU- -5'
8153 3' -54 NC_001978.2 + 39858 0.71 0.392939
Target:  5'- ---gGGCGUucAGGGCGUCG-GCGCGCu -3'
miRNA:   3'- gucaUCGCG--UUUCGCAGCuCGUGCGu -5'
8153 3' -54 NC_001978.2 + 22339 0.69 0.483437
Target:  5'- cCGGUccGGCGuCGGguugccgucGGCGUCGAGCcauacGCGCAu -3'
miRNA:   3'- -GUCA--UCGC-GUU---------UCGCAGCUCG-----UGCGU- -5'
8153 3' -54 NC_001978.2 + 18907 0.69 0.490901
Target:  5'- gCAGgcucaGGCGCuccgcAGCGUCGAuagcggggaacgccGCGCGCAc -3'
miRNA:   3'- -GUCa----UCGCGuu---UCGCAGCU--------------CGUGCGU- -5'
8153 3' -54 NC_001978.2 + 6408 0.69 0.494116
Target:  5'- uCGGgaauGCGCGAcacGUgGUCGAGCACGUAu -3'
miRNA:   3'- -GUCau--CGCGUUu--CG-CAGCUCGUGCGU- -5'
8153 3' -54 NC_001978.2 + 8604 0.69 0.515788
Target:  5'- --aUGGCGCGAAGCaUCGGGgCACGg- -3'
miRNA:   3'- gucAUCGCGUUUCGcAGCUC-GUGCgu -5'
8153 3' -54 NC_001978.2 + 31617 0.68 0.548979
Target:  5'- -uGUGGgGCAuGGCGagUGAGCACaGCAa -3'
miRNA:   3'- guCAUCgCGUuUCGCa-GCUCGUG-CGU- -5'
8153 3' -54 NC_001978.2 + 7263 0.68 0.557946
Target:  5'- uCAGaAGCGaaccggcuccGGCGUCGAGUACGUc -3'
miRNA:   3'- -GUCaUCGCguu-------UCGCAGCUCGUGCGu -5'
8153 3' -54 NC_001978.2 + 24754 0.67 0.5794
Target:  5'- ---aAGCGCcacacccugagucaGAAGCGUCGGGCGacgGCAu -3'
miRNA:   3'- gucaUCGCG--------------UUUCGCAGCUCGUg--CGU- -5'
8153 3' -54 NC_001978.2 + 26088 0.67 0.582805
Target:  5'- ---cGGCGCcguucAGGUGUCGAGCACuCAg -3'
miRNA:   3'- gucaUCGCGu----UUCGCAGCUCGUGcGU- -5'
8153 3' -54 NC_001978.2 + 38551 0.67 0.594182
Target:  5'- uCAGguucgucgGGCauuucaGCGAAGCGcCGGGCACGUc -3'
miRNA:   3'- -GUCa-------UCG------CGUUUCGCaGCUCGUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.