miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8153 3' -54 NC_001978.2 + 870 0.66 0.696852
Target:  5'- gGGUcgAGUGCuccGGCGcCuGGGCGCGCGa -3'
miRNA:   3'- gUCA--UCGCGuu-UCGCaG-CUCGUGCGU- -5'
8153 3' -54 NC_001978.2 + 2152 0.67 0.60445
Target:  5'- uCAGUucguGCGCGGuGCGUCGAcaugguuGC-CGCAu -3'
miRNA:   3'- -GUCAu---CGCGUUuCGCAGCU-------CGuGCGU- -5'
8153 3' -54 NC_001978.2 + 3600 0.66 0.651379
Target:  5'- -cGUGcGCGCGAAGCGUggCGuGC-CGCu -3'
miRNA:   3'- guCAU-CGCGUUUCGCA--GCuCGuGCGu -5'
8153 3' -54 NC_001978.2 + 4302 0.67 0.639933
Target:  5'- ---gGGCGCAuuucuauGCG-CGGGUACGCGu -3'
miRNA:   3'- gucaUCGCGUuu-----CGCaGCUCGUGCGU- -5'
8153 3' -54 NC_001978.2 + 6238 0.77 0.154522
Target:  5'- ---aAGCGCGGAGUcgucaagaccGUCGAGCGCGCGa -3'
miRNA:   3'- gucaUCGCGUUUCG----------CAGCUCGUGCGU- -5'
8153 3' -54 NC_001978.2 + 6408 0.69 0.494116
Target:  5'- uCGGgaauGCGCGAcacGUgGUCGAGCACGUAu -3'
miRNA:   3'- -GUCau--CGCGUUu--CG-CAGCUCGUGCGU- -5'
8153 3' -54 NC_001978.2 + 7263 0.68 0.557946
Target:  5'- uCAGaAGCGaaccggcuccGGCGUCGAGUACGUc -3'
miRNA:   3'- -GUCaUCGCguu-------UCGCAGCUCGUGCGu -5'
8153 3' -54 NC_001978.2 + 8604 0.69 0.515788
Target:  5'- --aUGGCGCGAAGCaUCGGGgCACGg- -3'
miRNA:   3'- gucAUCGCGUUUCGcAGCUC-GUGCgu -5'
8153 3' -54 NC_001978.2 + 8818 0.67 0.617029
Target:  5'- cCGGUcgGGgGCGAAGCGggggcacUGAGCGcCGCAc -3'
miRNA:   3'- -GUCA--UCgCGUUUCGCa------GCUCGU-GCGU- -5'
8153 3' -54 NC_001978.2 + 14031 0.66 0.673064
Target:  5'- cCAGUGGCgauuaacGCGAAcGCGUUGAGUccguCGCu -3'
miRNA:   3'- -GUCAUCG-------CGUUU-CGCAGCUCGu---GCGu -5'
8153 3' -54 NC_001978.2 + 16803 0.67 0.615884
Target:  5'- cCAGUAGCGCccaggcuGAAGCacgGUCGAcGCAauggGCAg -3'
miRNA:   3'- -GUCAUCGCG-------UUUCG---CAGCU-CGUg---CGU- -5'
8153 3' -54 NC_001978.2 + 18907 0.69 0.490901
Target:  5'- gCAGgcucaGGCGCuccgcAGCGUCGAuagcggggaacgccGCGCGCAc -3'
miRNA:   3'- -GUCa----UCGCGuu---UCGCAGCU--------------CGUGCGU- -5'
8153 3' -54 NC_001978.2 + 21891 0.66 0.662806
Target:  5'- gGGUGGaCGUAGaAGCG-CGAGC-CGCc -3'
miRNA:   3'- gUCAUC-GCGUU-UCGCaGCUCGuGCGu -5'
8153 3' -54 NC_001978.2 + 22197 0.66 0.651379
Target:  5'- aAGUGcucGaCGUAGGGCGUCagaucAGCGCGCAc -3'
miRNA:   3'- gUCAU---C-GCGUUUCGCAGc----UCGUGCGU- -5'
8153 3' -54 NC_001978.2 + 22339 0.69 0.483437
Target:  5'- cCGGUccGGCGuCGGguugccgucGGCGUCGAGCcauacGCGCAu -3'
miRNA:   3'- -GUCA--UCGC-GUU---------UCGCAGCUCG-----UGCGU- -5'
8153 3' -54 NC_001978.2 + 22961 0.66 0.685554
Target:  5'- cUAGUcGCGCGucacGGGCGUCacgauGAGCGCGa- -3'
miRNA:   3'- -GUCAuCGCGU----UUCGCAG-----CUCGUGCgu -5'
8153 3' -54 NC_001978.2 + 23933 0.75 0.234917
Target:  5'- aCAGUGGCGCcuucacGGCGUCGucagaagcGGUGCGCAu -3'
miRNA:   3'- -GUCAUCGCGuu----UCGCAGC--------UCGUGCGU- -5'
8153 3' -54 NC_001978.2 + 24000 0.79 0.112347
Target:  5'- gUAGgaauGC-CGAAGCGUCGAGCACGCu -3'
miRNA:   3'- -GUCau--CGcGUUUCGCAGCUCGUGCGu -5'
8153 3' -54 NC_001978.2 + 24450 0.66 0.674201
Target:  5'- cCAGggcaGGCGC--AGCGUCGGGCcCGa- -3'
miRNA:   3'- -GUCa---UCGCGuuUCGCAGCUCGuGCgu -5'
8153 3' -54 NC_001978.2 + 24754 0.67 0.5794
Target:  5'- ---aAGCGCcacacccugagucaGAAGCGUCGGGCGacgGCAu -3'
miRNA:   3'- gucaUCGCG--------------UUUCGCAGCUCGUg--CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.