miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8155 5' -57.7 NC_001978.2 + 295 0.75 0.151881
Target:  5'- aGGUGCgcgggcacaCGGGGCGCUCGACCC--UCGu -3'
miRNA:   3'- -CCGCG---------GCCUCGUGAGCUGGGuaAGCc -5'
8155 5' -57.7 NC_001978.2 + 810 1.13 0.000268
Target:  5'- aGGCGCCGGAGCACUCGACCCAUUCGGa -3'
miRNA:   3'- -CCGCGGCCUCGUGAGCUGGGUAAGCC- -5'
8155 5' -57.7 NC_001978.2 + 857 0.71 0.270843
Target:  5'- cGGCGCCuGGGCGCgCGACUgGgcaCGGg -3'
miRNA:   3'- -CCGCGGcCUCGUGaGCUGGgUaa-GCC- -5'
8155 5' -57.7 NC_001978.2 + 1491 0.66 0.546363
Target:  5'- uGGCGCCGGaAGCA-UCGGaCCGUUg-- -3'
miRNA:   3'- -CCGCGGCC-UCGUgAGCUgGGUAAgcc -5'
8155 5' -57.7 NC_001978.2 + 5109 0.66 0.525283
Target:  5'- uGGCGUCGauaccGCGCUUGAUCCGgccgucaaagUCGGc -3'
miRNA:   3'- -CCGCGGCcu---CGUGAGCUGGGUa---------AGCC- -5'
8155 5' -57.7 NC_001978.2 + 5171 0.68 0.406879
Target:  5'- aGCGCCGGAGC-C-CGaACCCugaaggcCGGa -3'
miRNA:   3'- cCGCGGCCUCGuGaGC-UGGGuaa----GCC- -5'
8155 5' -57.7 NC_001978.2 + 6726 0.68 0.416111
Target:  5'- cGCGCCGGAGCGCauaGCCa---CGGg -3'
miRNA:   3'- cCGCGGCCUCGUGagcUGGguaaGCC- -5'
8155 5' -57.7 NC_001978.2 + 8873 0.72 0.226455
Target:  5'- gGGCGCUGuGGC--UCGACCCAUUCa- -3'
miRNA:   3'- -CCGCGGCcUCGugAGCUGGGUAAGcc -5'
8155 5' -57.7 NC_001978.2 + 9025 0.68 0.416111
Target:  5'- uGGCGCCGGuaucgcugaGGCGCUUGAgCgGgaagcCGGg -3'
miRNA:   3'- -CCGCGGCC---------UCGUGAGCUgGgUaa---GCC- -5'
8155 5' -57.7 NC_001978.2 + 9126 0.67 0.494268
Target:  5'- -cCGCCGGugaaguGUAUUCGGCCgGUUaCGGc -3'
miRNA:   3'- ccGCGGCCu-----CGUGAGCUGGgUAA-GCC- -5'
8155 5' -57.7 NC_001978.2 + 9772 0.66 0.557005
Target:  5'- cGCGuuGcugaaGCUCGACCCGUcgUCGGc -3'
miRNA:   3'- cCGCggCcucg-UGAGCUGGGUA--AGCC- -5'
8155 5' -57.7 NC_001978.2 + 10008 0.68 0.444558
Target:  5'- cGUGUCGGAGCACaguaCGACCUucaaGGu -3'
miRNA:   3'- cCGCGGCCUCGUGa---GCUGGGuaagCC- -5'
8155 5' -57.7 NC_001978.2 + 11001 0.68 0.406879
Target:  5'- uGGUucgGCCGGAcCG-UCGAgCCGUUCGGa -3'
miRNA:   3'- -CCG---CGGCCUcGUgAGCUgGGUAAGCC- -5'
8155 5' -57.7 NC_001978.2 + 13948 0.67 0.464117
Target:  5'- cGUGauuaCGGAGCGCUCGACgUcgUUGa -3'
miRNA:   3'- cCGCg---GCCUCGUGAGCUGgGuaAGCc -5'
8155 5' -57.7 NC_001978.2 + 14335 0.66 0.546363
Target:  5'- -aCGCCGGAGCGaaggUGugUCuUUCGGc -3'
miRNA:   3'- ccGCGGCCUCGUga--GCugGGuAAGCC- -5'
8155 5' -57.7 NC_001978.2 + 17690 0.7 0.345989
Target:  5'- cGGCuaCGGGGCACguggCGcccaggucACCCAggUCGGu -3'
miRNA:   3'- -CCGcgGCCUCGUGa---GC--------UGGGUa-AGCC- -5'
8155 5' -57.7 NC_001978.2 + 17839 0.69 0.371267
Target:  5'- cGGCGUCGGAccaAUUCGGCCC---CGGa -3'
miRNA:   3'- -CCGCGGCCUcg-UGAGCUGGGuaaGCC- -5'
8155 5' -57.7 NC_001978.2 + 18157 0.66 0.525283
Target:  5'- cGGCGCCGGAguaaccGCGCUUGcgcuGCCacUUCGc -3'
miRNA:   3'- -CCGCGGCCU------CGUGAGC----UGGguAAGCc -5'
8155 5' -57.7 NC_001978.2 + 19346 0.68 0.416111
Target:  5'- gGGCaUCGGAGCGCUaCGuCCCGa-CGGa -3'
miRNA:   3'- -CCGcGGCCUCGUGA-GCuGGGUaaGCC- -5'
8155 5' -57.7 NC_001978.2 + 19766 0.67 0.494268
Target:  5'- uGGCGUagucGAGCGCuUCGGCCCAgUCc- -3'
miRNA:   3'- -CCGCGgc--CUCGUG-AGCUGGGUaAGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.