miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8155 5' -57.7 NC_001978.2 + 1491 0.66 0.546363
Target:  5'- uGGCGCCGGaAGCA-UCGGaCCGUUg-- -3'
miRNA:   3'- -CCGCGGCC-UCGUgAGCUgGGUAAgcc -5'
8155 5' -57.7 NC_001978.2 + 13948 0.67 0.464117
Target:  5'- cGUGauuaCGGAGCGCUCGACgUcgUUGa -3'
miRNA:   3'- cCGCg---GCCUCGUGAGCUGgGuaAGCc -5'
8155 5' -57.7 NC_001978.2 + 23799 0.67 0.473064
Target:  5'- -uUGCCgacuaguGGcAGCGCUCGACCCGgcgUCGc -3'
miRNA:   3'- ccGCGG-------CC-UCGUGAGCUGGGUa--AGCc -5'
8155 5' -57.7 NC_001978.2 + 25452 0.67 0.494268
Target:  5'- aGGCGCUGGGGC-UUCGcuacuCCCccgaCGGg -3'
miRNA:   3'- -CCGCGGCCUCGuGAGCu----GGGuaa-GCC- -5'
8155 5' -57.7 NC_001978.2 + 9126 0.67 0.494268
Target:  5'- -cCGCCGGugaaguGUAUUCGGCCgGUUaCGGc -3'
miRNA:   3'- ccGCGGCCu-----CGUGAGCUGGgUAA-GCC- -5'
8155 5' -57.7 NC_001978.2 + 35672 0.67 0.504518
Target:  5'- --aGaCCGGucGGCACUCGAagcCCCGUaCGGa -3'
miRNA:   3'- ccgC-GGCC--UCGUGAGCU---GGGUAaGCC- -5'
8155 5' -57.7 NC_001978.2 + 24835 0.66 0.51382
Target:  5'- cGGCGCUGGGGCuaccggugcgccuACUgcgacgcaaaggCGACCCAUcUUGa -3'
miRNA:   3'- -CCGCGGCCUCG-------------UGA------------GCUGGGUA-AGCc -5'
8155 5' -57.7 NC_001978.2 + 31468 0.66 0.522147
Target:  5'- cGGC-CCGGAGCACUcccgaacaacacaaCGACCgAa--GGg -3'
miRNA:   3'- -CCGcGGCCUCGUGA--------------GCUGGgUaagCC- -5'
8155 5' -57.7 NC_001978.2 + 39569 0.66 0.525283
Target:  5'- cGuCGCCGGAagGUGgUCGACCCGUcCGc -3'
miRNA:   3'- cC-GCGGCCU--CGUgAGCUGGGUAaGCc -5'
8155 5' -57.7 NC_001978.2 + 22597 0.67 0.451351
Target:  5'- aGGCGUCGGggcgcauggugaccGGCACUCagcgacgcGCCCGguagCGGg -3'
miRNA:   3'- -CCGCGGCC--------------UCGUGAGc-------UGGGUaa--GCC- -5'
8155 5' -57.7 NC_001978.2 + 10008 0.68 0.444558
Target:  5'- cGUGUCGGAGCACaguaCGACCUucaaGGu -3'
miRNA:   3'- cCGCGGCCUCGUGa---GCUGGGuaagCC- -5'
8155 5' -57.7 NC_001978.2 + 28298 0.68 0.434953
Target:  5'- cGCGCCGGGcucGCGCUUGAUCUugaguacgUCGa -3'
miRNA:   3'- cCGCGGCCU---CGUGAGCUGGGua------AGCc -5'
8155 5' -57.7 NC_001978.2 + 28059 0.73 0.203963
Target:  5'- cGGCGCCGGA-CACUcagggCGACCUAacggCGGu -3'
miRNA:   3'- -CCGCGGCCUcGUGA-----GCUGGGUaa--GCC- -5'
8155 5' -57.7 NC_001978.2 + 38576 0.73 0.209398
Target:  5'- aGCGCCGG-GCACgUCGGC--GUUCGGg -3'
miRNA:   3'- cCGCGGCCuCGUG-AGCUGggUAAGCC- -5'
8155 5' -57.7 NC_001978.2 + 8873 0.72 0.226455
Target:  5'- gGGCGCUGuGGC--UCGACCCAUUCa- -3'
miRNA:   3'- -CCGCGGCcUCGugAGCUGGGUAAGcc -5'
8155 5' -57.7 NC_001978.2 + 38184 0.71 0.277727
Target:  5'- cGUGCCGGAGCAaUCG-CCCugggUGGg -3'
miRNA:   3'- cCGCGGCCUCGUgAGCuGGGuaa-GCC- -5'
8155 5' -57.7 NC_001978.2 + 17690 0.7 0.345989
Target:  5'- cGGCuaCGGGGCACguggCGcccaggucACCCAggUCGGu -3'
miRNA:   3'- -CCGcgGCCUCGUGa---GC--------UGGGUa-AGCC- -5'
8155 5' -57.7 NC_001978.2 + 27065 0.7 0.345989
Target:  5'- cGCGCCGGAagaGCGCgacuaCGACCUugacCGGa -3'
miRNA:   3'- cCGCGGCCU---CGUGa----GCUGGGuaa-GCC- -5'
8155 5' -57.7 NC_001978.2 + 9025 0.68 0.416111
Target:  5'- uGGCGCCGGuaucgcugaGGCGCUUGAgCgGgaagcCGGg -3'
miRNA:   3'- -CCGCGGCC---------UCGUGAGCUgGgUaa---GCC- -5'
8155 5' -57.7 NC_001978.2 + 19346 0.68 0.416111
Target:  5'- gGGCaUCGGAGCGCUaCGuCCCGa-CGGa -3'
miRNA:   3'- -CCGcGGCCUCGUGA-GCuGGGUaaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.