miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8158 5' -55.2 NC_001978.2 + 29416 0.66 0.667667
Target:  5'- gGCCGG---UCCUGGGGGUcGCUguaUGGCg -3'
miRNA:   3'- -CGGCUcuaAGGACUCUCGaUGG---GCCG- -5'
8158 5' -55.2 NC_001978.2 + 987 0.66 0.667667
Target:  5'- cGgCGGGAgUCUggcGGGGGCgacgACCCGGa -3'
miRNA:   3'- -CgGCUCUaAGGa--CUCUCGa---UGGGCCg -5'
8158 5' -55.2 NC_001978.2 + 33160 0.66 0.656511
Target:  5'- cGCUGAGAUUC--GGGAGUU-CgCCGGUc -3'
miRNA:   3'- -CGGCUCUAAGgaCUCUCGAuG-GGCCG- -5'
8158 5' -55.2 NC_001978.2 + 17938 0.66 0.645332
Target:  5'- uGCCGAGAagCUUcGucAGCgacccuucGCCCGGCa -3'
miRNA:   3'- -CGGCUCUaaGGA-CucUCGa-------UGGGCCG- -5'
8158 5' -55.2 NC_001978.2 + 16115 0.67 0.609526
Target:  5'- uGCCGAcgucggggcGAUUCCcguugccgacaaGGGAGUUGCguCCGGCg -3'
miRNA:   3'- -CGGCU---------CUAAGGa-----------CUCUCGAUG--GGCCG- -5'
8158 5' -55.2 NC_001978.2 + 30296 0.67 0.600595
Target:  5'- cGCCGAGGgcgaCgUGuacGaAGCcGCCCGGCu -3'
miRNA:   3'- -CGGCUCUaa--GgACu--C-UCGaUGGGCCG- -5'
8158 5' -55.2 NC_001978.2 + 15994 0.67 0.600595
Target:  5'- gGCCgGAGggUCCgGAGGGU---CCGGCc -3'
miRNA:   3'- -CGG-CUCuaAGGaCUCUCGaugGGCCG- -5'
8158 5' -55.2 NC_001978.2 + 2561 0.67 0.577246
Target:  5'- uGCCGuGAcggUCgaCUGAGccacgacGGCaACCCGGCg -3'
miRNA:   3'- -CGGCuCUa--AG--GACUC-------UCGaUGGGCCG- -5'
8158 5' -55.2 NC_001978.2 + 17633 0.67 0.556297
Target:  5'- cGCUGAGccgUCC--GGAGCcgucGCCCGGUa -3'
miRNA:   3'- -CGGCUCua-AGGacUCUCGa---UGGGCCG- -5'
8158 5' -55.2 NC_001978.2 + 1328 0.71 0.38394
Target:  5'- cGCUGAcgcgacGGUUCCcagUGAGGGUUACCgGGUc -3'
miRNA:   3'- -CGGCU------CUAAGG---ACUCUCGAUGGgCCG- -5'
8158 5' -55.2 NC_001978.2 + 5406 1.13 0.000416
Target:  5'- gGCCGAGAUUCCUGAGAGCUACCCGGCc -3'
miRNA:   3'- -CGGCUCUAAGGACUCUCGAUGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.