Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8159 | 3' | -58.7 | NC_001978.2 | + | 5812 | 1.11 | 0.000277 |
Target: 5'- gCUCUUACCGUCGGCGCCCCGGACACCu -3' miRNA: 3'- -GAGAAUGGCAGCCGCGGGGCCUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 5891 | 0.78 | 0.074303 |
Target: 5'- -cCUUGCCGUUgaaGGUGUCCgGGGCGCCg -3' miRNA: 3'- gaGAAUGGCAG---CCGCGGGgCCUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 21462 | 0.74 | 0.140679 |
Target: 5'- gUCUUGCCGUCGGCGaacagagacucaaCCaccauguaaCCGGGCACg -3' miRNA: 3'- gAGAAUGGCAGCCGC-------------GG---------GGCCUGUGg -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 25647 | 0.74 | 0.14496 |
Target: 5'- -aCUUGCCGcUCaGGUcacGCCCCuGGGCGCCa -3' miRNA: 3'- gaGAAUGGC-AG-CCG---CGGGG-CCUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 35165 | 0.73 | 0.179828 |
Target: 5'- uUCUgaguucGCCGUCaGCGCCCCGG-UACg -3' miRNA: 3'- gAGAa-----UGGCAGcCGCGGGGCCuGUGg -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 29028 | 0.73 | 0.184677 |
Target: 5'- -cCUUGCCGaaucCGGCGCCCUuGaACACCu -3' miRNA: 3'- gaGAAUGGCa---GCCGCGGGGcC-UGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 26169 | 0.72 | 0.194207 |
Target: 5'- ----cAgCGUCGGCGCCCUGagugcucGACACCu -3' miRNA: 3'- gagaaUgGCAGCCGCGGGGC-------CUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 28049 | 0.72 | 0.205238 |
Target: 5'- gUCgacCCGUCGGCGCC--GGACACUc -3' miRNA: 3'- gAGaauGGCAGCCGCGGggCCUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 33843 | 0.72 | 0.221935 |
Target: 5'- gUCggGCCGaCGGCGUuaCCCGGGUGCCg -3' miRNA: 3'- gAGaaUGGCaGCCGCG--GGGCCUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 8266 | 0.71 | 0.227752 |
Target: 5'- -cCUUGauGaCGGCGCCCuucgCGGACGCCg -3' miRNA: 3'- gaGAAUggCaGCCGCGGG----GCCUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 1822 | 0.71 | 0.233698 |
Target: 5'- cCUgUUGCCGUcCGGCGUCCgCcGACACg -3' miRNA: 3'- -GAgAAUGGCA-GCCGCGGG-GcCUGUGg -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 17773 | 0.71 | 0.258795 |
Target: 5'- -cCUUACCGaccUgGGUGaCCUGGGCGCCa -3' miRNA: 3'- gaGAAUGGC---AgCCGCgGGGCCUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 16228 | 0.7 | 0.271469 |
Target: 5'- -----cCCGUCGGUGCCCagcguggcaacgcCGGACGCa -3' miRNA: 3'- gagaauGGCAGCCGCGGG-------------GCCUGUGg -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 3528 | 0.7 | 0.272149 |
Target: 5'- uUCuUUGCCaaUGGCGCCaugCCGGGCGCUg -3' miRNA: 3'- gAG-AAUGGcaGCCGCGG---GGCCUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 26753 | 0.7 | 0.278337 |
Target: 5'- -aCUUuCCGUUGGCGCCCUuGccccacaGCACCg -3' miRNA: 3'- gaGAAuGGCAGCCGCGGGGcC-------UGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 14376 | 0.7 | 0.286051 |
Target: 5'- gCUCUUACCGgcaCGaCGUCCCGcGCGCUg -3' miRNA: 3'- -GAGAAUGGCa--GCcGCGGGGCcUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 12505 | 0.7 | 0.293209 |
Target: 5'- gUCU--CCGUCGGCGuUCCCGGucggcuucACGCUg -3' miRNA: 3'- gAGAauGGCAGCCGC-GGGGCC--------UGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 19935 | 0.69 | 0.31552 |
Target: 5'- aUCg---CGUCGGC-CCCCGGcacgGCGCCa -3' miRNA: 3'- gAGaaugGCAGCCGcGGGGCC----UGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 6091 | 0.69 | 0.323236 |
Target: 5'- ----gACCGUCagaaccuucGCGCCCCGGGCGUCg -3' miRNA: 3'- gagaaUGGCAGc--------CGCGGGGCCUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 37701 | 0.68 | 0.363909 |
Target: 5'- -----cCCGUCGuGCGCCCCugGGugAUCu -3' miRNA: 3'- gagaauGGCAGC-CGCGGGG--CCugUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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