Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8159 | 3' | -58.7 | NC_001978.2 | + | 5812 | 1.11 | 0.000277 |
Target: 5'- gCUCUUACCGUCGGCGCCCCGGACACCu -3' miRNA: 3'- -GAGAAUGGCAGCCGCGGGGCCUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 35569 | 0.66 | 0.495127 |
Target: 5'- gUCgaGCCGgagaCGGCGCCCCugagcgucGGCGCg -3' miRNA: 3'- gAGaaUGGCa---GCCGCGGGGc-------CUGUGg -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 9013 | 0.66 | 0.495127 |
Target: 5'- ----cGCCGUCGGCauugGCgCCGGuauCGCUg -3' miRNA: 3'- gagaaUGGCAGCCG----CGgGGCCu--GUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 37114 | 0.66 | 0.485008 |
Target: 5'- gUCUUACCcUgGGCGCCauGGG-ACCg -3' miRNA: 3'- gAGAAUGGcAgCCGCGGggCCUgUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 1743 | 0.67 | 0.435042 |
Target: 5'- -aCUUACCGggucgugUCGGCGgaCgCCGGACGgCa -3' miRNA: 3'- gaGAAUGGC-------AGCCGCg-G-GGCCUGUgG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 792 | 0.67 | 0.426536 |
Target: 5'- ---gUGCCcaGUCGcGCGCCCa-GGCGCCg -3' miRNA: 3'- gagaAUGG--CAGC-CGCGGGgcCUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 28768 | 0.67 | 0.417201 |
Target: 5'- ----gAUUGUCGGagaCGCCCCGGAuCACa -3' miRNA: 3'- gagaaUGGCAGCC---GCGGGGCCU-GUGg -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 1480 | 0.67 | 0.398009 |
Target: 5'- cCUUcgGCCGUUGGCGCCggaagcaUCGGAC-Cg -3' miRNA: 3'- -GAGaaUGGCAGCCGCGG-------GGCCUGuGg -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 36733 | 0.68 | 0.38996 |
Target: 5'- ----aGCCGgagaCGGCGCCCCaggccguucaGGACGuCCu -3' miRNA: 3'- gagaaUGGCa---GCCGCGGGG----------CCUGU-GG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 37701 | 0.68 | 0.363909 |
Target: 5'- -----cCCGUCGuGCGCCCCugGGugAUCu -3' miRNA: 3'- gagaauGGCAGC-CGCGGGG--CCugUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 6010 | 0.68 | 0.363909 |
Target: 5'- gUCUUcUUGUCGaCGCCCgGGGCGCg -3' miRNA: 3'- gAGAAuGGCAGCcGCGGGgCCUGUGg -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 35165 | 0.73 | 0.179828 |
Target: 5'- uUCUgaguucGCCGUCaGCGCCCCGG-UACg -3' miRNA: 3'- gAGAa-----UGGCAGcCGCGGGGCCuGUGg -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 28049 | 0.72 | 0.205238 |
Target: 5'- gUCgacCCGUCGGCGCC--GGACACUc -3' miRNA: 3'- gAGaauGGCAGCCGCGGggCCUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 33843 | 0.72 | 0.221935 |
Target: 5'- gUCggGCCGaCGGCGUuaCCCGGGUGCCg -3' miRNA: 3'- gAGaaUGGCaGCCGCG--GGGCCUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 3528 | 0.7 | 0.272149 |
Target: 5'- uUCuUUGCCaaUGGCGCCaugCCGGGCGCUg -3' miRNA: 3'- gAG-AAUGGcaGCCGCGG---GGCCUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 14376 | 0.7 | 0.286051 |
Target: 5'- gCUCUUACCGgcaCGaCGUCCCGcGCGCUg -3' miRNA: 3'- -GAGAAUGGCa--GCcGCGGGGCcUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 12505 | 0.7 | 0.293209 |
Target: 5'- gUCU--CCGUCGGCGuUCCCGGucggcuucACGCUg -3' miRNA: 3'- gAGAauGGCAGCCGC-GGGGCC--------UGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 38580 | 0.68 | 0.363909 |
Target: 5'- -cCggGCaCGUCGGCGUUCgGGACGgCg -3' miRNA: 3'- gaGaaUG-GCAGCCGCGGGgCCUGUgG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 5891 | 0.78 | 0.074303 |
Target: 5'- -cCUUGCCGUUgaaGGUGUCCgGGGCGCCg -3' miRNA: 3'- gaGAAUGGCAG---CCGCGGGgCCUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 7393 | 0.66 | 0.495127 |
Target: 5'- uUCgaGCCGUCGa--CCCCGGGCcgaACCa -3' miRNA: 3'- gAGaaUGGCAGCcgcGGGGCCUG---UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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