Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8159 | 3' | -58.7 | NC_001978.2 | + | 8266 | 0.71 | 0.227752 |
Target: 5'- -cCUUGauGaCGGCGCCCuucgCGGACGCCg -3' miRNA: 3'- gaGAAUggCaGCCGCGGG----GCCUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 26169 | 0.72 | 0.194207 |
Target: 5'- ----cAgCGUCGGCGCCCUGagugcucGACACCu -3' miRNA: 3'- gagaaUgGCAGCCGCGGGGC-------CUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 29028 | 0.73 | 0.184677 |
Target: 5'- -cCUUGCCGaaucCGGCGCCCUuGaACACCu -3' miRNA: 3'- gaGAAUGGCa---GCCGCGGGGcC-UGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 25647 | 0.74 | 0.14496 |
Target: 5'- -aCUUGCCGcUCaGGUcacGCCCCuGGGCGCCa -3' miRNA: 3'- gaGAAUGGC-AG-CCG---CGGGG-CCUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 21462 | 0.74 | 0.140679 |
Target: 5'- gUCUUGCCGUCGGCGaacagagacucaaCCaccauguaaCCGGGCACg -3' miRNA: 3'- gAGAAUGGCAGCCGC-------------GG---------GGCCUGUGg -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 16228 | 0.7 | 0.271469 |
Target: 5'- -----cCCGUCGGUGCCCagcguggcaacgcCGGACGCa -3' miRNA: 3'- gagaauGGCAGCCGCGGG-------------GCCUGUGg -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 26753 | 0.7 | 0.278337 |
Target: 5'- -aCUUuCCGUUGGCGCCCUuGccccacaGCACCg -3' miRNA: 3'- gaGAAuGGCAGCCGCGGGGcC-------UGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 19935 | 0.69 | 0.31552 |
Target: 5'- aUCg---CGUCGGC-CCCCGGcacgGCGCCa -3' miRNA: 3'- gAGaaugGCAGCCGcGGGGCC----UGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 6091 | 0.69 | 0.323236 |
Target: 5'- ----gACCGUCagaaccuucGCGCCCCGGGCGUCg -3' miRNA: 3'- gagaaUGGCAGc--------CGCGGGGCCUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 25734 | 0.68 | 0.372458 |
Target: 5'- ----cGCCGUaacCGGCGucaCCCCGGAacaCGCCa -3' miRNA: 3'- gagaaUGGCA---GCCGC---GGGGCCU---GUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 18341 | 0.67 | 0.417201 |
Target: 5'- -gCUUGCUGU-GGuCGCCCauGGCGCCc -3' miRNA: 3'- gaGAAUGGCAgCC-GCGGGgcCUGUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 30497 | 0.66 | 0.455265 |
Target: 5'- ----aACCGUCGGCGUCCgCGuucucagccgacGugACCu -3' miRNA: 3'- gagaaUGGCAGCCGCGGG-GC------------CugUGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 7393 | 0.66 | 0.495127 |
Target: 5'- uUCgaGCCGUCGa--CCCCGGGCcgaACCa -3' miRNA: 3'- gAGaaUGGCAGCcgcGGGGCCUG---UGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 35867 | 0.66 | 0.505342 |
Target: 5'- -cCUUGCCGucgucuUCGGCGUCagugagCGGAC-CCu -3' miRNA: 3'- gaGAAUGGC------AGCCGCGGg-----GCCUGuGG- -5' |
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8159 | 3' | -58.7 | NC_001978.2 | + | 5891 | 0.78 | 0.074303 |
Target: 5'- -cCUUGCCGUUgaaGGUGUCCgGGGCGCCg -3' miRNA: 3'- gaGAAUGGCAG---CCGCGGGgCCUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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