miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8159 3' -58.7 NC_001978.2 + 18341 0.67 0.417201
Target:  5'- -gCUUGCUGU-GGuCGCCCauGGCGCCc -3'
miRNA:   3'- gaGAAUGGCAgCC-GCGGGgcCUGUGG- -5'
8159 3' -58.7 NC_001978.2 + 7393 0.66 0.495127
Target:  5'- uUCgaGCCGUCGa--CCCCGGGCcgaACCa -3'
miRNA:   3'- gAGaaUGGCAGCcgcGGGGCCUG---UGG- -5'
8159 3' -58.7 NC_001978.2 + 35867 0.66 0.505342
Target:  5'- -cCUUGCCGucgucuUCGGCGUCagugagCGGAC-CCu -3'
miRNA:   3'- gaGAAUGGC------AGCCGCGGg-----GCCUGuGG- -5'
8159 3' -58.7 NC_001978.2 + 1822 0.71 0.233698
Target:  5'- cCUgUUGCCGUcCGGCGUCCgCcGACACg -3'
miRNA:   3'- -GAgAAUGGCA-GCCGCGGG-GcCUGUGg -5'
8159 3' -58.7 NC_001978.2 + 16228 0.7 0.271469
Target:  5'- -----cCCGUCGGUGCCCagcguggcaacgcCGGACGCa -3'
miRNA:   3'- gagaauGGCAGCCGCGGG-------------GCCUGUGg -5'
8159 3' -58.7 NC_001978.2 + 26753 0.7 0.278337
Target:  5'- -aCUUuCCGUUGGCGCCCUuGccccacaGCACCg -3'
miRNA:   3'- gaGAAuGGCAGCCGCGGGGcC-------UGUGG- -5'
8159 3' -58.7 NC_001978.2 + 5891 0.78 0.074303
Target:  5'- -cCUUGCCGUUgaaGGUGUCCgGGGCGCCg -3'
miRNA:   3'- gaGAAUGGCAG---CCGCGGGgCCUGUGG- -5'
8159 3' -58.7 NC_001978.2 + 29028 0.73 0.184677
Target:  5'- -cCUUGCCGaaucCGGCGCCCUuGaACACCu -3'
miRNA:   3'- gaGAAUGGCa---GCCGCGGGGcC-UGUGG- -5'
8159 3' -58.7 NC_001978.2 + 26169 0.72 0.194207
Target:  5'- ----cAgCGUCGGCGCCCUGagugcucGACACCu -3'
miRNA:   3'- gagaaUgGCAGCCGCGGGGC-------CUGUGG- -5'
8159 3' -58.7 NC_001978.2 + 17773 0.71 0.258795
Target:  5'- -cCUUACCGaccUgGGUGaCCUGGGCGCCa -3'
miRNA:   3'- gaGAAUGGC---AgCCGCgGGGCCUGUGG- -5'
8159 3' -58.7 NC_001978.2 + 25734 0.68 0.372458
Target:  5'- ----cGCCGUaacCGGCGucaCCCCGGAacaCGCCa -3'
miRNA:   3'- gagaaUGGCA---GCCGC---GGGGCCU---GUGG- -5'
8159 3' -58.7 NC_001978.2 + 25647 0.74 0.14496
Target:  5'- -aCUUGCCGcUCaGGUcacGCCCCuGGGCGCCa -3'
miRNA:   3'- gaGAAUGGC-AG-CCG---CGGGG-CCUGUGG- -5'
8159 3' -58.7 NC_001978.2 + 6091 0.69 0.323236
Target:  5'- ----gACCGUCagaaccuucGCGCCCCGGGCGUCg -3'
miRNA:   3'- gagaaUGGCAGc--------CGCGGGGCCUGUGG- -5'
8159 3' -58.7 NC_001978.2 + 8266 0.71 0.227752
Target:  5'- -cCUUGauGaCGGCGCCCuucgCGGACGCCg -3'
miRNA:   3'- gaGAAUggCaGCCGCGGG----GCCUGUGG- -5'
8159 3' -58.7 NC_001978.2 + 21462 0.74 0.140679
Target:  5'- gUCUUGCCGUCGGCGaacagagacucaaCCaccauguaaCCGGGCACg -3'
miRNA:   3'- gAGAAUGGCAGCCGC-------------GG---------GGCCUGUGg -5'
8159 3' -58.7 NC_001978.2 + 19935 0.69 0.31552
Target:  5'- aUCg---CGUCGGC-CCCCGGcacgGCGCCa -3'
miRNA:   3'- gAGaaugGCAGCCGcGGGGCC----UGUGG- -5'
8159 3' -58.7 NC_001978.2 + 30497 0.66 0.455265
Target:  5'- ----aACCGUCGGCGUCCgCGuucucagccgacGugACCu -3'
miRNA:   3'- gagaaUGGCAGCCGCGGG-GC------------CugUGG- -5'
8159 3' -58.7 NC_001978.2 + 1743 0.67 0.435042
Target:  5'- -aCUUACCGggucgugUCGGCGgaCgCCGGACGgCa -3'
miRNA:   3'- gaGAAUGGC-------AGCCGCg-G-GGCCUGUgG- -5'
8159 3' -58.7 NC_001978.2 + 792 0.67 0.426536
Target:  5'- ---gUGCCcaGUCGcGCGCCCa-GGCGCCg -3'
miRNA:   3'- gagaAUGG--CAGC-CGCGGGgcCUGUGG- -5'
8159 3' -58.7 NC_001978.2 + 28768 0.67 0.417201
Target:  5'- ----gAUUGUCGGagaCGCCCCGGAuCACa -3'
miRNA:   3'- gagaaUGGCAGCC---GCGGGGCCU-GUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.