miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8163 5' -54 NC_001978.2 + 22664 0.66 0.746025
Target:  5'- gUGCCgGUCACCaugcgcccCGACgccUUCCGUG-CGa -3'
miRNA:   3'- -ACGG-CAGUGGaa------GCUG---AAGGCACuGC- -5'
8163 5' -54 NC_001978.2 + 13738 0.66 0.735338
Target:  5'- gUGCCGUUGCCguugUCGGCgccgaCCGcauaGGCGc -3'
miRNA:   3'- -ACGGCAGUGGa---AGCUGaa---GGCa---CUGC- -5'
8163 5' -54 NC_001978.2 + 25649 0.66 0.713651
Target:  5'- cGCUGggCGCCguauggCGugUUCCGgggUGACGc -3'
miRNA:   3'- aCGGCa-GUGGaa----GCugAAGGC---ACUGC- -5'
8163 5' -54 NC_001978.2 + 8241 0.66 0.713651
Target:  5'- cGCCGUgACCUUaaugGACUUgucgagcuugcCCG-GACGg -3'
miRNA:   3'- aCGGCAgUGGAAg---CUGAA-----------GGCaCUGC- -5'
8163 5' -54 NC_001978.2 + 39740 0.67 0.691628
Target:  5'- -uUCGUCGCCUUCGGCgugCC-UGAUc -3'
miRNA:   3'- acGGCAGUGGAAGCUGaa-GGcACUGc -5'
8163 5' -54 NC_001978.2 + 26007 0.67 0.69052
Target:  5'- cGCCGUCAag-UCGGCUcgacccgUCCGcGACc -3'
miRNA:   3'- aCGGCAGUggaAGCUGA-------AGGCaCUGc -5'
8163 5' -54 NC_001978.2 + 35434 0.67 0.680522
Target:  5'- aUGCCcaacaagaUCACUUUCGGCgcgUCCGUacuGGCGu -3'
miRNA:   3'- -ACGGc-------AGUGGAAGCUGa--AGGCA---CUGC- -5'
8163 5' -54 NC_001978.2 + 14142 0.67 0.680522
Target:  5'- aGCCGcCGCUUcaagUCGuucAgUUCCGUGACa -3'
miRNA:   3'- aCGGCaGUGGA----AGC---UgAAGGCACUGc -5'
8163 5' -54 NC_001978.2 + 26913 0.67 0.669367
Target:  5'- uUGCCcgacUCGCCUUCGGacgCCaUGACGa -3'
miRNA:   3'- -ACGGc---AGUGGAAGCUgaaGGcACUGC- -5'
8163 5' -54 NC_001978.2 + 32416 0.67 0.669367
Target:  5'- aGCCGUucggcggaCGCUUcagCGcGCUUCUGUGACGc -3'
miRNA:   3'- aCGGCA--------GUGGAa--GC-UGAAGGCACUGC- -5'
8163 5' -54 NC_001978.2 + 33547 0.67 0.669367
Target:  5'- cUGCCauugcggguGUCGCCcuugUCGGCg-CCGUGACc -3'
miRNA:   3'- -ACGG---------CAGUGGa---AGCUGaaGGCACUGc -5'
8163 5' -54 NC_001978.2 + 2560 0.67 0.669367
Target:  5'- gUGCCGUgACggUCGACUgagCCacGACGg -3'
miRNA:   3'- -ACGGCAgUGgaAGCUGAa--GGcaCUGC- -5'
8163 5' -54 NC_001978.2 + 17504 0.67 0.653692
Target:  5'- cGCCGUCGCCcucagcgcugccgUUCGugUUcguguugccgccgaCCGUGuACGc -3'
miRNA:   3'- aCGGCAGUGG-------------AAGCugAA--------------GGCAC-UGC- -5'
8163 5' -54 NC_001978.2 + 10721 0.67 0.63573
Target:  5'- cGUCGUCGCUU---GCUUCCGcUGugGg -3'
miRNA:   3'- aCGGCAGUGGAagcUGAAGGC-ACugC- -5'
8163 5' -54 NC_001978.2 + 32089 0.67 0.63573
Target:  5'- uUGCCGUU-CCggcCGACcgugCCGUGAUGa -3'
miRNA:   3'- -ACGGCAGuGGaa-GCUGaa--GGCACUGC- -5'
8163 5' -54 NC_001978.2 + 2982 0.68 0.624496
Target:  5'- -cCUGggCGCCgUUCGGCUUCCGgcgaGACGg -3'
miRNA:   3'- acGGCa-GUGG-AAGCUGAAGGCa---CUGC- -5'
8163 5' -54 NC_001978.2 + 24833 0.68 0.61327
Target:  5'- aUGCCGUCGCCcgaCG-CUUCUgacucaggguGUGGCGc -3'
miRNA:   3'- -ACGGCAGUGGaa-GCuGAAGG----------CACUGC- -5'
8163 5' -54 NC_001978.2 + 15818 0.68 0.590877
Target:  5'- cGCCGUCcgacACCUUCGACcacacgCCGcccGACu -3'
miRNA:   3'- aCGGCAG----UGGAAGCUGaa----GGCa--CUGc -5'
8163 5' -54 NC_001978.2 + 18368 0.68 0.579731
Target:  5'- cGUCGUCGCCcuugUCGGCgucgcuacggCCGUGAa- -3'
miRNA:   3'- aCGGCAGUGGa---AGCUGaa--------GGCACUgc -5'
8163 5' -54 NC_001978.2 + 19432 0.69 0.56863
Target:  5'- uUGCaCGUCACg-UCGGCgUCCGUcggGACGu -3'
miRNA:   3'- -ACG-GCAGUGgaAGCUGaAGGCA---CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.