Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8164 | 3' | -59.6 | NC_001978.2 | + | 7879 | 1.11 | 0.000189 |
Target: 5'- cUGCCGUUCCGUGUGCUCGACCCGGGCg -3' miRNA: 3'- -ACGGCAAGGCACACGAGCUGGGCCCG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 22447 | 0.66 | 0.445571 |
Target: 5'- cUGCCGUUCUGcacGUGaCUgacgaGACgUGGGCu -3' miRNA: 3'- -ACGGCAAGGCa--CAC-GAg----CUGgGCCCG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 16016 | 0.66 | 0.433143 |
Target: 5'- gGCCGgUCCGgaggGUccccaggguccgaaGggUGACCCGGGUa -3' miRNA: 3'- aCGGCaAGGCa---CA--------------CgaGCUGGGCCCG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 18930 | 0.66 | 0.39891 |
Target: 5'- aGCaugGUUCgG-GUGaCUCGACCCGGcacGCu -3' miRNA: 3'- aCGg--CAAGgCaCAC-GAGCUGGGCC---CG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 39163 | 0.67 | 0.38996 |
Target: 5'- cGCUGacgCCGU--GC-CGACCCGGGg -3' miRNA: 3'- aCGGCaa-GGCAcaCGaGCUGGGCCCg -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 23197 | 0.67 | 0.38996 |
Target: 5'- gGUCGUUcCCGUcGcGCUCGACaaGuGGCg -3' miRNA: 3'- aCGGCAA-GGCA-CaCGAGCUGggC-CCG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 33575 | 0.67 | 0.372458 |
Target: 5'- cGCCGUgaCCGUcggGUGU--GACCCcGGGCc -3' miRNA: 3'- aCGGCAa-GGCA---CACGagCUGGG-CCCG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 1414 | 0.67 | 0.372458 |
Target: 5'- aGCCGUUCCG---GCUCcuUCCGuGGCa -3' miRNA: 3'- aCGGCAAGGCacaCGAGcuGGGC-CCG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 25540 | 0.67 | 0.369022 |
Target: 5'- gGUCGUUCCGcUGaagggauucgacgGCgUGACCCGuGGCg -3' miRNA: 3'- aCGGCAAGGC-ACa------------CGaGCUGGGC-CCG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 4596 | 0.67 | 0.355498 |
Target: 5'- -aCC-UUCCGcGUGCUCGACggUGGGCa -3' miRNA: 3'- acGGcAAGGCaCACGAGCUGg-GCCCG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 6805 | 0.68 | 0.323236 |
Target: 5'- cUGCCGUgaacgCCGaccuUGUG-UCGGuCCCGGGg -3' miRNA: 3'- -ACGGCAa----GGC----ACACgAGCU-GGGCCCg -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 39565 | 0.76 | 0.095757 |
Target: 5'- cUGCCGUcgCCGgaagGUGgUCGACCCguccgcaccuGGGCa -3' miRNA: 3'- -ACGGCAa-GGCa---CACgAGCUGGG----------CCCG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 16712 | 0.72 | 0.165956 |
Target: 5'- cGCCGUUCCGcUGcccauUGCgUCGaccgugcuucaGCCUGGGCg -3' miRNA: 3'- aCGGCAAGGC-AC-----ACG-AGC-----------UGGGCCCG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 32089 | 0.72 | 0.165956 |
Target: 5'- uUGCCGUUCCGgccgaccGUGCcgugaUGACCCcGGCu -3' miRNA: 3'- -ACGGCAAGGCa------CACGa----GCUGGGcCCG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 25934 | 0.72 | 0.170014 |
Target: 5'- gUGcCCGUUCCGgguacgaccuuacUGacugGCgugagcgCGACCCGGGCa -3' miRNA: 3'- -AC-GGCAAGGC-------------ACa---CGa------GCUGGGCCCG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 5157 | 0.7 | 0.239774 |
Target: 5'- cGCCGUUCUucGUGCgggCaACCUGGGUg -3' miRNA: 3'- aCGGCAAGGcaCACGa--GcUGGGCCCG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 23799 | 0.69 | 0.258795 |
Target: 5'- uUGCCGacuaGUGgcagcGCUCGACCCGGcGUc -3' miRNA: 3'- -ACGGCaaggCACa----CGAGCUGGGCC-CG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 13163 | 0.68 | 0.310957 |
Target: 5'- gGgCGUUCCGgccuugugGUGCUccgcgacggcgaaccCGACUgGGGCg -3' miRNA: 3'- aCgGCAAGGCa-------CACGA---------------GCUGGgCCCG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 40637 | 0.75 | 0.104131 |
Target: 5'- cGCCGUUCCuuagcgGUGCUUGAUgCGuGGCg -3' miRNA: 3'- aCGGCAAGGca----CACGAGCUGgGC-CCG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 11955 | 0.67 | 0.38996 |
Target: 5'- aGCCGcaaCCG-GUGaUC-ACCCGGGCc -3' miRNA: 3'- aCGGCaa-GGCaCACgAGcUGGGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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