miRNA display CGI


Results 21 - 24 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8164 3' -59.6 NC_001978.2 + 11480 0.67 0.363909
Target:  5'- gGCCGUUCgGUcGgacGCUgCG-CCCGGGa -3'
miRNA:   3'- aCGGCAAGgCA-Ca--CGA-GCuGGGCCCg -5'
8164 3' -59.6 NC_001978.2 + 35626 0.67 0.347224
Target:  5'- cGCCGUcUCCG---GCUCGACauCCGGcGCu -3'
miRNA:   3'- aCGGCA-AGGCacaCGAGCUG--GGCC-CG- -5'
8164 3' -59.6 NC_001978.2 + 2711 0.7 0.245981
Target:  5'- cGCgUGUUCCuucGUGaUGCgcgCGcCCCGGGCg -3'
miRNA:   3'- aCG-GCAAGG---CAC-ACGa--GCuGGGCCCG- -5'
8164 3' -59.6 NC_001978.2 + 40637 0.75 0.104131
Target:  5'- cGCCGUUCCuuagcgGUGCUUGAUgCGuGGCg -3'
miRNA:   3'- aCGGCAAGGca----CACGAGCUGgGC-CCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.