Results 1 - 20 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 11644 | 1.1 | 0.000098 |
Target: 5'- gGGCAGGGACCGGCGCCGGACGACCCGg -3' miRNA: 3'- -CCGUCCCUGGCCGCGGCCUGCUGGGC- -5' |
|||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 9646 | 0.66 | 0.251314 |
Target: 5'- gGGC--GGACCGGuCGCgaaGGACG-CCCu -3' miRNA: 3'- -CCGucCCUGGCC-GCGg--CCUGCuGGGc -5' |
|||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 6415 | 0.66 | 0.251314 |
Target: 5'- aGGCugGGGGAaaUUGGCGCCcGACGucgcuGCCUGa -3' miRNA: 3'- -CCG--UCCCU--GGCCGCGGcCUGC-----UGGGC- -5' |
|||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 16613 | 0.66 | 0.239286 |
Target: 5'- cGGCAGGGGCgCGGUaguugugaaGUCGGAU--UCCGu -3' miRNA: 3'- -CCGUCCCUG-GCCG---------CGGCCUGcuGGGC- -5' |
|||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 15980 | 0.67 | 0.211314 |
Target: 5'- -cCAGGGuCCGGaaggGCCGGAgGGUCCGg -3' miRNA: 3'- ccGUCCCuGGCCg---CGGCCUgCUGGGC- -5' |
|||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 18086 | 0.67 | 0.211314 |
Target: 5'- uGGCAGcgcaagcgcGGuuacuCCGGCGCCGacgcuGACGguugGCCCGg -3' miRNA: 3'- -CCGUC---------CCu----GGCCGCGGC-----CUGC----UGGGC- -5' |
|||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 12038 | 0.67 | 0.206069 |
Target: 5'- uGGCAGGuGAUcgcuaCGGCGCgCGG-CGGCuuCCGg -3' miRNA: 3'- -CCGUCC-CUG-----GCCGCG-GCCuGCUG--GGC- -5' |
|||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 40280 | 0.68 | 0.186202 |
Target: 5'- gGGCAGcGGgaagggucgGCCGGUcccCCGGuCGGCCCa -3' miRNA: 3'- -CCGUC-CC---------UGGCCGc--GGCCuGCUGGGc -5' |
|||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 11447 | 0.68 | 0.181507 |
Target: 5'- uGGCAcGGGCacgcaagcgguCGGCGCCGcuCGACCUGa -3' miRNA: 3'- -CCGUcCCUG-----------GCCGCGGCcuGCUGGGC- -5' |
|||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 4617 | 0.68 | 0.176916 |
Target: 5'- gGGCAGcGACgGGCGgaCGacGACGACCCu -3' miRNA: 3'- -CCGUCcCUGgCCGCg-GC--CUGCUGGGc -5' |
|||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 10871 | 0.77 | 0.036969 |
Target: 5'- uGGguG-GACCGGCGuCCgGGugGACCCGu -3' miRNA: 3'- -CCguCcCUGGCCGC-GG-CCugCUGGGC- -5' |
|||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 20883 | 0.72 | 0.08902 |
Target: 5'- gGGCAGGGaAUCGaGCuuccccgcuacgGCCGGACGgagcuuGCCCGg -3' miRNA: 3'- -CCGUCCC-UGGC-CG------------CGGCCUGC------UGGGC- -5' |
|||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 28009 | 0.72 | 0.100222 |
Target: 5'- cGGCAuuGGGACCGGCcucaaGCCGcucagugcguucuacGuCGACCCGu -3' miRNA: 3'- -CCGU--CCCUGGCCG-----CGGC---------------CuGCUGGGC- -5' |
|||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 1280 | 0.71 | 0.122755 |
Target: 5'- cGUGGcGGACUGG-GCCGGAauCGACCCc -3' miRNA: 3'- cCGUC-CCUGGCCgCGGCCU--GCUGGGc -5' |
|||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 987 | 0.7 | 0.132884 |
Target: 5'- cGGCGGGaGuCUGGCGgggGcGACGACCCGg -3' miRNA: 3'- -CCGUCC-CuGGCCGCgg-C-CUGCUGGGC- -5' |
|||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 8832 | 0.68 | 0.17243 |
Target: 5'- aGCGGGGgcACUGaGCGCCGcACG-CCCGu -3' miRNA: 3'- cCGUCCC--UGGC-CGCGGCcUGCuGGGC- -5' |
|||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 5594 | 0.7 | 0.136428 |
Target: 5'- uGGCc-GGACCGGCGUCGGA-GACaaGg -3' miRNA: 3'- -CCGucCCUGGCCGCGGCCUgCUGggC- -5' |
|||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 34711 | 0.66 | 0.245239 |
Target: 5'- uGCAacGGGGCucaguCGGCGUCGGcuCGaACCCGg -3' miRNA: 3'- cCGU--CCCUG-----GCCGCGGCCu-GC-UGGGC- -5' |
|||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 19149 | 0.67 | 0.235773 |
Target: 5'- cGGCGGGGGCCGaaggugcuagcgcgaGCGCggcaacaGGAgugagucaaCGAUCCGg -3' miRNA: 3'- -CCGUCCCUGGC---------------CGCGg------CCU---------GCUGGGC- -5' |
|||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 27308 | 0.67 | 0.230013 |
Target: 5'- cGGCAgcgucgagcacgcccGGGAagaaaCCGGCGagcgcaUCGGACGucGCCCGg -3' miRNA: 3'- -CCGU---------------CCCU-----GGCCGC------GGCCUGC--UGGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home