Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 8171 | 3' | -64.5 | NC_001978.2 | + | 20642 | 0.68 | 0.200936 |
|
Target: 5'- aGGuCGGGcaGACCGGuCGCCGGguucACGAUCUu -3' miRNA: 3'- -CC-GUCC--CUGGCC-GCGGCC----UGCUGGGc -5' |
|||||||
| 8171 | 3' | -64.5 | NC_001978.2 | + | 5184 | 0.67 | 0.216674 |
|
Target: 5'- cGGCGGaacGCUGaGCGCCGGA--GCCCGa -3' miRNA: 3'- -CCGUCcc-UGGC-CGCGGCCUgcUGGGC- -5' |
|||||||
| 8171 | 3' | -64.5 | NC_001978.2 | + | 27308 | 0.67 | 0.230013 |
|
Target: 5'- cGGCAgcgucgagcacgcccGGGAagaaaCCGGCGagcgcaUCGGACGucGCCCGg -3' miRNA: 3'- -CCGU---------------CCCU-----GGCCGC------GGCCUGC--UGGGC- -5' |
|||||||
| 8171 | 3' | -64.5 | NC_001978.2 | + | 19149 | 0.67 | 0.235773 |
|
Target: 5'- cGGCGGGGGCCGaaggugcuagcgcgaGCGCggcaacaGGAgugagucaaCGAUCCGg -3' miRNA: 3'- -CCGUCCCUGGC---------------CGCGg------CCU---------GCUGGGC- -5' |
|||||||
| 8171 | 3' | -64.5 | NC_001978.2 | + | 34711 | 0.66 | 0.245239 |
|
Target: 5'- uGCAacGGGGCucaguCGGCGUCGGcuCGaACCCGg -3' miRNA: 3'- cCGU--CCCUG-----GCCGCGGCCu-GC-UGGGC- -5' |
|||||||
| 8171 | 3' | -64.5 | NC_001978.2 | + | 34596 | 0.66 | 0.263837 |
|
Target: 5'- cGGCAGGG-UCGGa-CCGG-CGAgCCa -3' miRNA: 3'- -CCGUCCCuGGCCgcGGCCuGCUgGGc -5' |
|||||||
| 8171 | 3' | -64.5 | NC_001978.2 | + | 5594 | 0.7 | 0.136428 |
|
Target: 5'- uGGCc-GGACCGGCGUCGGA-GACaaGg -3' miRNA: 3'- -CCGucCCUGGCCGCGGCCUgCUGggC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home