Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8176 | 3' | -55.6 | NC_001978.2 | + | 18459 | 0.73 | 0.237863 |
Target: 5'- uAGCGCC-GCUcaGGUUGCCGAC--UCCCu -3' miRNA: 3'- -UCGCGGaCGG--CUAACGGUUGcaAGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 22632 | 0.73 | 0.25079 |
Target: 5'- cGCGCCcgguaGCgGGUUGCCGAC--UCCCu -3' miRNA: 3'- uCGCGGa----CGgCUAACGGUUGcaAGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 30655 | 0.72 | 0.271259 |
Target: 5'- cGGCGCUUGaaGAcgUGCUGACGgUCCCc -3' miRNA: 3'- -UCGCGGACggCUa-ACGGUUGCaAGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 36792 | 0.72 | 0.278375 |
Target: 5'- gAGCcggaGCCUGCCGAcga-CGACGUUCCg -3' miRNA: 3'- -UCG----CGGACGGCUaacgGUUGCAAGGg -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 15492 | 0.72 | 0.293051 |
Target: 5'- cGCcCCUGCCGAcccgacuacGCCGACGUacguugccgUCCCg -3' miRNA: 3'- uCGcGGACGGCUaa-------CGGUUGCA---------AGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 36640 | 0.71 | 0.316186 |
Target: 5'- aGGCGCUUGCCGAc-GCUgAGCGggaagCCCu -3' miRNA: 3'- -UCGCGGACGGCUaaCGG-UUGCaa---GGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 3539 | 0.69 | 0.422064 |
Target: 5'- uGGCGCCaUGCCGGgcGCUGugGUUgagguaCCg -3' miRNA: 3'- -UCGCGG-ACGGCUaaCGGUugCAAg-----GG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 28414 | 0.69 | 0.427894 |
Target: 5'- cGGCGCCcagguUGCCGAagcguugcUUGCCAugGgcgagacgcugaCCCa -3' miRNA: 3'- -UCGCGG-----ACGGCU--------AACGGUugCaa----------GGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 16456 | 0.67 | 0.546596 |
Target: 5'- cAGCGCUUGCgGAgu-CCAACuGUUCUUc -3' miRNA: 3'- -UCGCGGACGgCUaacGGUUG-CAAGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 17384 | 0.68 | 0.503426 |
Target: 5'- gAGCGCCgaccGCCGGauacGCCGACcaacgCCCc -3' miRNA: 3'- -UCGCGGa---CGGCUaa--CGGUUGcaa--GGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 33205 | 0.68 | 0.503426 |
Target: 5'- cAGCGUCgGCgGcaacgUGCCAACGcuugCCCa -3' miRNA: 3'- -UCGCGGaCGgCua---ACGGUUGCaa--GGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 9872 | 0.68 | 0.472043 |
Target: 5'- cGCGCC-GUCGAccUUGCCcAGCG-UCUCa -3' miRNA: 3'- uCGCGGaCGGCU--AACGG-UUGCaAGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 21946 | 0.68 | 0.472043 |
Target: 5'- cGGCaGCaUGCCGAUaaCCGACGUcacgCCCg -3' miRNA: 3'- -UCG-CGgACGGCUAacGGUUGCAa---GGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 22490 | 0.67 | 0.546596 |
Target: 5'- cAGCGCC-GUCGAacuCCGGCaucgGUUCCCg -3' miRNA: 3'- -UCGCGGaCGGCUaacGGUUG----CAAGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 12835 | 0.67 | 0.546596 |
Target: 5'- gGGCGCguaaUGCCGGUcGgCAGCGUcgCCa -3' miRNA: 3'- -UCGCGg---ACGGCUAaCgGUUGCAa-GGg -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 39893 | 0.67 | 0.557582 |
Target: 5'- cGCGCCUGCCGcgcgGUCuuCGUacagCUCu -3' miRNA: 3'- uCGCGGACGGCuaa-CGGuuGCAa---GGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 27833 | 0.66 | 0.579731 |
Target: 5'- uGCGCCgUGCCGAacugaaccgUGCgCAGCuuGUaCCCg -3' miRNA: 3'- uCGCGG-ACGGCUa--------ACG-GUUG--CAaGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 12911 | 0.66 | 0.61327 |
Target: 5'- aAGCGCgauacgGCCGAcgccacccGCCGACGUgcUUCCg -3' miRNA: 3'- -UCGCGga----CGGCUaa------CGGUUGCA--AGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 32285 | 0.66 | 0.624496 |
Target: 5'- uGGCGCgCUGCCGcucaGCCucagccguGCGccaUCCCu -3' miRNA: 3'- -UCGCG-GACGGCuaa-CGGu-------UGCa--AGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 351 | 0.73 | 0.231611 |
Target: 5'- aGGCGCCcauaCCGGcUUGCCAcACGUUCCg -3' miRNA: 3'- -UCGCGGac--GGCU-AACGGU-UGCAAGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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