miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8176 3' -55.6 NC_001978.2 + 12765 0.66 0.579731
Target:  5'- uGGCGaCgCUGCCGAccgGCauuACGcgCCCg -3'
miRNA:   3'- -UCGC-G-GACGGCUaa-CGgu-UGCaaGGG- -5'
8176 3' -55.6 NC_001978.2 + 28414 0.69 0.427894
Target:  5'- cGGCGCCcagguUGCCGAagcguugcUUGCCAugGgcgagacgcugaCCCa -3'
miRNA:   3'- -UCGCGG-----ACGGCU--------AACGGUugCaa----------GGG- -5'
8176 3' -55.6 NC_001978.2 + 35212 0.69 0.431807
Target:  5'- gGGCGCCggaagGacaCGGgcGCCAugGUUgCCg -3'
miRNA:   3'- -UCGCGGa----Cg--GCUaaCGGUugCAAgGG- -5'
8176 3' -55.6 NC_001978.2 + 15945 0.68 0.472043
Target:  5'- gGGCGCgacgggcGCCGAc--UCGACGUUCCCg -3'
miRNA:   3'- -UCGCGga-----CGGCUaacGGUUGCAAGGG- -5'
8176 3' -55.6 NC_001978.2 + 16090 0.68 0.482397
Target:  5'- uAGgGCCggauaucacccuUGCCGc-UGCCGACGUcggggcgauUCCCg -3'
miRNA:   3'- -UCgCGG------------ACGGCuaACGGUUGCA---------AGGG- -5'
8176 3' -55.6 NC_001978.2 + 22994 0.67 0.535681
Target:  5'- cGCGUUguaccGCCcgGGUUGCCGACG-UCCUu -3'
miRNA:   3'- uCGCGGa----CGG--CUAACGGUUGCaAGGG- -5'
8176 3' -55.6 NC_001978.2 + 33534 0.67 0.546596
Target:  5'- aAGCGCgUUGCCGc-UGCCAuuGCGggugucgCCCu -3'
miRNA:   3'- -UCGCG-GACGGCuaACGGU--UGCaa-----GGG- -5'
8176 3' -55.6 NC_001978.2 + 25015 0.67 0.557582
Target:  5'- -cCGCCgacugaGCCgGGUUGCCGAC--UCCCu -3'
miRNA:   3'- ucGCGGa-----CGG-CUAACGGUUGcaAGGG- -5'
8176 3' -55.6 NC_001978.2 + 26312 0.67 0.56863
Target:  5'- cGGCGCUUgugcucGCCGGUUGCCugcCGgagUCgCg -3'
miRNA:   3'- -UCGCGGA------CGGCUAACGGuu-GCa--AGgG- -5'
8176 3' -55.6 NC_001978.2 + 3539 0.69 0.422064
Target:  5'- uGGCGCCaUGCCGGgcGCUGugGUUgagguaCCg -3'
miRNA:   3'- -UCGCGG-ACGGCUaaCGGUugCAAg-----GG- -5'
8176 3' -55.6 NC_001978.2 + 36640 0.71 0.316186
Target:  5'- aGGCGCUUGCCGAc-GCUgAGCGggaagCCCu -3'
miRNA:   3'- -UCGCGGACGGCUaaCGG-UUGCaa---GGG- -5'
8176 3' -55.6 NC_001978.2 + 15492 0.72 0.293051
Target:  5'- cGCcCCUGCCGAcccgacuacGCCGACGUacguugccgUCCCg -3'
miRNA:   3'- uCGcGGACGGCUaa-------CGGUUGCA---------AGGG- -5'
8176 3' -55.6 NC_001978.2 + 12323 0.8 0.07695
Target:  5'- -aCGCCUGCCGcUUcGCCGACGgUCCCg -3'
miRNA:   3'- ucGCGGACGGCuAA-CGGUUGCaAGGG- -5'
8176 3' -55.6 NC_001978.2 + 27452 0.76 0.153495
Target:  5'- cGCGCCUGCCGcc-GCUAcCGgUCCCg -3'
miRNA:   3'- uCGCGGACGGCuaaCGGUuGCaAGGG- -5'
8176 3' -55.6 NC_001978.2 + 19869 0.75 0.176448
Target:  5'- uGGCGCCgUGCCGGggGCCGACGcgaUUCa- -3'
miRNA:   3'- -UCGCGG-ACGGCUaaCGGUUGC---AAGgg -5'
8176 3' -55.6 NC_001978.2 + 12495 0.74 0.202403
Target:  5'- cAGUG-CUGCCGucuccGUCGGCGUUCCCg -3'
miRNA:   3'- -UCGCgGACGGCuaa--CGGUUGCAAGGG- -5'
8176 3' -55.6 NC_001978.2 + 18459 0.73 0.237863
Target:  5'- uAGCGCC-GCUcaGGUUGCCGAC--UCCCu -3'
miRNA:   3'- -UCGCGGaCGG--CUAACGGUUGcaAGGG- -5'
8176 3' -55.6 NC_001978.2 + 22632 0.73 0.25079
Target:  5'- cGCGCCcgguaGCgGGUUGCCGAC--UCCCu -3'
miRNA:   3'- uCGCGGa----CGgCUAACGGUUGcaAGGG- -5'
8176 3' -55.6 NC_001978.2 + 30655 0.72 0.271259
Target:  5'- cGGCGCUUGaaGAcgUGCUGACGgUCCCc -3'
miRNA:   3'- -UCGCGGACggCUa-ACGGUUGCaAGGG- -5'
8176 3' -55.6 NC_001978.2 + 36792 0.72 0.278375
Target:  5'- gAGCcggaGCCUGCCGAcga-CGACGUUCCg -3'
miRNA:   3'- -UCG----CGGACGGCUaacgGUUGCAAGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.