miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8176 3' -55.6 NC_001978.2 + 144 0.7 0.366501
Target:  5'- cGUGCCgaagUGCCGcUUGCCcAGCGUUCa- -3'
miRNA:   3'- uCGCGG----ACGGCuAACGG-UUGCAAGgg -5'
8176 3' -55.6 NC_001978.2 + 351 0.73 0.231611
Target:  5'- aGGCGCCcauaCCGGcUUGCCAcACGUUCCg -3'
miRNA:   3'- -UCGCGGac--GGCU-AACGGU-UGCAAGGg -5'
8176 3' -55.6 NC_001978.2 + 3539 0.69 0.422064
Target:  5'- uGGCGCCaUGCCGGgcGCUGugGUUgagguaCCg -3'
miRNA:   3'- -UCGCGG-ACGGCUaaCGGUugCAAg-----GG- -5'
8176 3' -55.6 NC_001978.2 + 4693 0.66 0.590877
Target:  5'- --aGCUgggGCCGGUUGugaauCCGGCGUaCCCa -3'
miRNA:   3'- ucgCGGa--CGGCUAAC-----GGUUGCAaGGG- -5'
8176 3' -55.6 NC_001978.2 + 4778 0.66 0.63573
Target:  5'- cGCGCC-GCCGAcUGaagAGCGcgaUUCCCa -3'
miRNA:   3'- uCGCGGaCGGCUaACgg-UUGC---AAGGG- -5'
8176 3' -55.6 NC_001978.2 + 9073 0.69 0.44168
Target:  5'- cGGCGCCaaUGCCGAcgGCgaUAGCGccaCCCg -3'
miRNA:   3'- -UCGCGG--ACGGCUaaCG--GUUGCaa-GGG- -5'
8176 3' -55.6 NC_001978.2 + 9872 0.68 0.472043
Target:  5'- cGCGCC-GUCGAccUUGCCcAGCG-UCUCa -3'
miRNA:   3'- uCGCGGaCGGCU--AACGG-UUGCaAGGG- -5'
8176 3' -55.6 NC_001978.2 + 12323 0.8 0.07695
Target:  5'- -aCGCCUGCCGcUUcGCCGACGgUCCCg -3'
miRNA:   3'- ucGCGGACGGCuAA-CGGUUGCaAGGG- -5'
8176 3' -55.6 NC_001978.2 + 12495 0.74 0.202403
Target:  5'- cAGUG-CUGCCGucuccGUCGGCGUUCCCg -3'
miRNA:   3'- -UCGCgGACGGCuaa--CGGUUGCAAGGG- -5'
8176 3' -55.6 NC_001978.2 + 12765 0.66 0.579731
Target:  5'- uGGCGaCgCUGCCGAccgGCauuACGcgCCCg -3'
miRNA:   3'- -UCGC-G-GACGGCUaa-CGgu-UGCaaGGG- -5'
8176 3' -55.6 NC_001978.2 + 12835 0.67 0.546596
Target:  5'- gGGCGCguaaUGCCGGUcGgCAGCGUcgCCa -3'
miRNA:   3'- -UCGCGg---ACGGCUAaCgGUUGCAa-GGg -5'
8176 3' -55.6 NC_001978.2 + 12911 0.66 0.61327
Target:  5'- aAGCGCgauacgGCCGAcgccacccGCCGACGUgcUUCCg -3'
miRNA:   3'- -UCGCGga----CGGCUaa------CGGUUGCA--AGGG- -5'
8176 3' -55.6 NC_001978.2 + 15492 0.72 0.293051
Target:  5'- cGCcCCUGCCGAcccgacuacGCCGACGUacguugccgUCCCg -3'
miRNA:   3'- uCGcGGACGGCUaa-------CGGUUGCA---------AGGG- -5'
8176 3' -55.6 NC_001978.2 + 15945 0.68 0.472043
Target:  5'- gGGCGCgacgggcGCCGAc--UCGACGUUCCCg -3'
miRNA:   3'- -UCGCGga-----CGGCUaacGGUUGCAAGGG- -5'
8176 3' -55.6 NC_001978.2 + 16090 0.68 0.482397
Target:  5'- uAGgGCCggauaucacccuUGCCGc-UGCCGACGUcggggcgauUCCCg -3'
miRNA:   3'- -UCgCGG------------ACGGCuaACGGUUGCA---------AGGG- -5'
8176 3' -55.6 NC_001978.2 + 16350 1.12 0.000349
Target:  5'- aAGCGCCUGCCGAUUGCCAACGUUCCCa -3'
miRNA:   3'- -UCGCGGACGGCUAACGGUUGCAAGGG- -5'
8176 3' -55.6 NC_001978.2 + 16456 0.67 0.546596
Target:  5'- cAGCGCUUGCgGAgu-CCAACuGUUCUUc -3'
miRNA:   3'- -UCGCGGACGgCUaacGGUUG-CAAGGG- -5'
8176 3' -55.6 NC_001978.2 + 16679 0.66 0.598702
Target:  5'- cGCGCUUGCCGcUaugcggucaacgcaUGUCGGCGccgUUCCg -3'
miRNA:   3'- uCGCGGACGGCuA--------------ACGGUUGCa--AGGG- -5'
8176 3' -55.6 NC_001978.2 + 17384 0.68 0.503426
Target:  5'- gAGCGCCgaccGCCGGauacGCCGACcaacgCCCc -3'
miRNA:   3'- -UCGCGGa---CGGCUaa--CGGUUGcaa--GGG- -5'
8176 3' -55.6 NC_001978.2 + 18459 0.73 0.237863
Target:  5'- uAGCGCC-GCUcaGGUUGCCGAC--UCCCu -3'
miRNA:   3'- -UCGCGGaCGG--CUAACGGUUGcaAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.