Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8176 | 3' | -55.6 | NC_001978.2 | + | 16350 | 1.12 | 0.000349 |
Target: 5'- aAGCGCCUGCCGAUUGCCAACGUUCCCa -3' miRNA: 3'- -UCGCGGACGGCUAACGGUUGCAAGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 12323 | 0.8 | 0.07695 |
Target: 5'- -aCGCCUGCCGcUUcGCCGACGgUCCCg -3' miRNA: 3'- ucGCGGACGGCuAA-CGGUUGCaAGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 27452 | 0.76 | 0.153495 |
Target: 5'- cGCGCCUGCCGcc-GCUAcCGgUCCCg -3' miRNA: 3'- uCGCGGACGGCuaaCGGUuGCaAGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 19869 | 0.75 | 0.176448 |
Target: 5'- uGGCGCCgUGCCGGggGCCGACGcgaUUCa- -3' miRNA: 3'- -UCGCGG-ACGGCUaaCGGUUGC---AAGgg -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 12495 | 0.74 | 0.202403 |
Target: 5'- cAGUG-CUGCCGucuccGUCGGCGUUCCCg -3' miRNA: 3'- -UCGCgGACGGCuaa--CGGUUGCAAGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 351 | 0.73 | 0.231611 |
Target: 5'- aGGCGCCcauaCCGGcUUGCCAcACGUUCCg -3' miRNA: 3'- -UCGCGGac--GGCU-AACGGU-UGCAAGGg -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 18459 | 0.73 | 0.237863 |
Target: 5'- uAGCGCC-GCUcaGGUUGCCGAC--UCCCu -3' miRNA: 3'- -UCGCGGaCGG--CUAACGGUUGcaAGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 22632 | 0.73 | 0.25079 |
Target: 5'- cGCGCCcgguaGCgGGUUGCCGAC--UCCCu -3' miRNA: 3'- uCGCGGa----CGgCUAACGGUUGcaAGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 30655 | 0.72 | 0.271259 |
Target: 5'- cGGCGCUUGaaGAcgUGCUGACGgUCCCc -3' miRNA: 3'- -UCGCGGACggCUa-ACGGUUGCaAGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 36792 | 0.72 | 0.278375 |
Target: 5'- gAGCcggaGCCUGCCGAcga-CGACGUUCCg -3' miRNA: 3'- -UCG----CGGACGGCUaacgGUUGCAAGGg -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 38654 | 0.72 | 0.278375 |
Target: 5'- gGGCGCUccGCCGucccgaacGCCGACGUgCCCg -3' miRNA: 3'- -UCGCGGa-CGGCuaa-----CGGUUGCAaGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 15492 | 0.72 | 0.293051 |
Target: 5'- cGCcCCUGCCGAcccgacuacGCCGACGUacguugccgUCCCg -3' miRNA: 3'- uCGcGGACGGCUaa-------CGGUUGCA---------AGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 38964 | 0.71 | 0.316186 |
Target: 5'- aGGCGCCUuCCc---GCCGACGUaCCCg -3' miRNA: 3'- -UCGCGGAcGGcuaaCGGUUGCAaGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 36640 | 0.71 | 0.316186 |
Target: 5'- aGGCGCUUGCCGAc-GCUgAGCGggaagCCCu -3' miRNA: 3'- -UCGCGGACGGCUaaCGG-UUGCaa---GGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 144 | 0.7 | 0.366501 |
Target: 5'- cGUGCCgaagUGCCGcUUGCCcAGCGUUCa- -3' miRNA: 3'- uCGCGG----ACGGCuAACGG-UUGCAAGgg -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 36525 | 0.7 | 0.382633 |
Target: 5'- cGCGCCcagcuucgucacGCCGuAUUcGCCAACGU-CCCu -3' miRNA: 3'- uCGCGGa-----------CGGC-UAA-CGGUUGCAaGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 3539 | 0.69 | 0.422064 |
Target: 5'- uGGCGCCaUGCCGGgcGCUGugGUUgagguaCCg -3' miRNA: 3'- -UCGCGG-ACGGCUaaCGGUugCAAg-----GG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 28414 | 0.69 | 0.427894 |
Target: 5'- cGGCGCCcagguUGCCGAagcguugcUUGCCAugGgcgagacgcugaCCCa -3' miRNA: 3'- -UCGCGG-----ACGGCU--------AACGGUugCaa----------GGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 35212 | 0.69 | 0.431807 |
Target: 5'- gGGCGCCggaagGacaCGGgcGCCAugGUUgCCg -3' miRNA: 3'- -UCGCGGa----Cg--GCUaaCGGUugCAAgGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 41389 | 0.69 | 0.44168 |
Target: 5'- cAGCGCUUGCaCG-UUGCCuucAACGUcuucgccgCCCa -3' miRNA: 3'- -UCGCGGACG-GCuAACGG---UUGCAa-------GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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