miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8177 5' -54.2 NC_001978.2 + 1718 0.66 0.719148
Target:  5'- uUCAccauuuGCuUCGCGGAGUCGAaGACCa-- -3'
miRNA:   3'- -AGU------UGuAGUGCCUCGGCUgCUGGcau -5'
8177 5' -54.2 NC_001978.2 + 13239 0.66 0.719148
Target:  5'- uUCGcCGUCGCGGAGCaccacaaGGCCGg- -3'
miRNA:   3'- -AGUuGUAGUGCCUCGgcug---CUGGCau -5'
8177 5' -54.2 NC_001978.2 + 20340 0.66 0.708142
Target:  5'- aCGGCGcgagagACGGAGCUGACG-CCGg- -3'
miRNA:   3'- aGUUGUag----UGCCUCGGCUGCuGGCau -5'
8177 5' -54.2 NC_001978.2 + 12196 0.66 0.697058
Target:  5'- -gGACcgUGcCGGAGCCGACcgcaACCGUGc -3'
miRNA:   3'- agUUGuaGU-GCCUCGGCUGc---UGGCAU- -5'
8177 5' -54.2 NC_001978.2 + 31210 0.66 0.697058
Target:  5'- gUCGGCAaCcCGGGGCgGAaCGugCGUGg -3'
miRNA:   3'- -AGUUGUaGuGCCUCGgCU-GCugGCAU- -5'
8177 5' -54.2 NC_001978.2 + 16404 0.66 0.695946
Target:  5'- aUCGGCAggcgcuUCGCGGAGUCGAgCGGggcaacuCCGUc -3'
miRNA:   3'- -AGUUGU------AGUGCCUCGGCU-GCU-------GGCAu -5'
8177 5' -54.2 NC_001978.2 + 985 0.66 0.674703
Target:  5'- cUCGGCgggaGUCugGCGGGGgCGACGACCc-- -3'
miRNA:   3'- -AGUUG----UAG--UGCCUCgGCUGCUGGcau -5'
8177 5' -54.2 NC_001978.2 + 4546 0.66 0.674703
Target:  5'- gCGACGUCGCuGAGCUacugaagcggGGCGACCu-- -3'
miRNA:   3'- aGUUGUAGUGcCUCGG----------CUGCUGGcau -5'
8177 5' -54.2 NC_001978.2 + 11843 0.66 0.674703
Target:  5'- cCGACAuUCGCGGGcuuaucGCUGACGGCuCGa- -3'
miRNA:   3'- aGUUGU-AGUGCCU------CGGCUGCUG-GCau -5'
8177 5' -54.2 NC_001978.2 + 19514 0.66 0.674703
Target:  5'- -gGACGUucgaCACGGAGCUGACcggcGCCGa- -3'
miRNA:   3'- agUUGUA----GUGCCUCGGCUGc---UGGCau -5'
8177 5' -54.2 NC_001978.2 + 37359 0.66 0.674703
Target:  5'- aUCGAagAUCACGGAGCCaACGaagcaacggcGCCGa- -3'
miRNA:   3'- -AGUUg-UAGUGCCUCGGcUGC----------UGGCau -5'
8177 5' -54.2 NC_001978.2 + 5364 0.67 0.652178
Target:  5'- -gGugAUCACGG-GUCgGGCGACCGc- -3'
miRNA:   3'- agUugUAGUGCCuCGG-CUGCUGGCau -5'
8177 5' -54.2 NC_001978.2 + 34664 0.67 0.629575
Target:  5'- uUCAGucgGUCGCGGAGCUuGCGcGCCGUc -3'
miRNA:   3'- -AGUUg--UAGUGCCUCGGcUGC-UGGCAu -5'
8177 5' -54.2 NC_001978.2 + 13946 0.67 0.629575
Target:  5'- uUCGugAUUACGGAGCgcuCGACG-UCGUu -3'
miRNA:   3'- -AGUugUAGUGCCUCG---GCUGCuGGCAu -5'
8177 5' -54.2 NC_001978.2 + 33906 0.67 0.606981
Target:  5'- gCGACGUguugGCGGAGCaucgggggaGGCGACCGg- -3'
miRNA:   3'- aGUUGUAg---UGCCUCGg--------CUGCUGGCau -5'
8177 5' -54.2 NC_001978.2 + 27329 0.68 0.595713
Target:  5'- cCGACAcaaUCGCGGAGUCGuCGGCagCGUc -3'
miRNA:   3'- aGUUGU---AGUGCCUCGGCuGCUG--GCAu -5'
8177 5' -54.2 NC_001978.2 + 31271 0.69 0.496808
Target:  5'- gUCGAguuCGUCACGGccaacGCCGACGGCgaCGUGa -3'
miRNA:   3'- -AGUU---GUAGUGCCu----CGGCUGCUG--GCAU- -5'
8177 5' -54.2 NC_001978.2 + 30743 0.69 0.496808
Target:  5'- gUCGACGUCGaccgaaGGGgaaguuGCCGACGACCu-- -3'
miRNA:   3'- -AGUUGUAGUg-----CCU------CGGCUGCUGGcau -5'
8177 5' -54.2 NC_001978.2 + 37888 0.71 0.396528
Target:  5'- aCAACGUCGCGcguGAGCgGGuCGGCCGg- -3'
miRNA:   3'- aGUUGUAGUGC---CUCGgCU-GCUGGCau -5'
8177 5' -54.2 NC_001978.2 + 7381 0.71 0.396528
Target:  5'- gCGACcgaAUGGAGCCuGACGGCCGa- -3'
miRNA:   3'- aGUUGuagUGCCUCGG-CUGCUGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.