miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8181 3' -56.9 NC_001978.2 + 26529 0.68 0.402945
Target:  5'- gUCGCUGCcgaUCGAgUACGaCCCGAacgcccaGGCu -3'
miRNA:   3'- aAGUGAUG---AGCUgGUGC-GGGCUg------CCG- -5'
8181 3' -56.9 NC_001978.2 + 27307 0.67 0.502189
Target:  5'- --gGCaGCgUCGAgCACGCCCGGgaagaaacCGGCg -3'
miRNA:   3'- aagUGaUG-AGCUgGUGCGGGCU--------GCCG- -5'
8181 3' -56.9 NC_001978.2 + 30020 0.66 0.523342
Target:  5'- cUCACgcgUugUCGcCCuuGCCCGuaagGCGGCu -3'
miRNA:   3'- aAGUG---AugAGCuGGugCGGGC----UGCCG- -5'
8181 3' -56.9 NC_001978.2 + 30468 0.72 0.227044
Target:  5'- -aCGCUgaagcACUaCGACgAagaGCCCGACGGCg -3'
miRNA:   3'- aaGUGA-----UGA-GCUGgUg--CGGGCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 32760 0.71 0.266271
Target:  5'- cUUGC-GCUCGAaggacuuguaacagaUACGCCCGGCGGCu -3'
miRNA:   3'- aAGUGaUGAGCUg--------------GUGCGGGCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 32888 0.71 0.294119
Target:  5'- -gCGCUACgUCGACCACGCCgacacUGAgcCGGUc -3'
miRNA:   3'- aaGUGAUG-AGCUGGUGCGG-----GCU--GCCG- -5'
8181 3' -56.9 NC_001978.2 + 33827 0.66 0.566592
Target:  5'- gUgACgucGCUCGACUGuCgGgCCGACGGCg -3'
miRNA:   3'- aAgUGa--UGAGCUGGU-G-CgGGCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 34235 0.69 0.384624
Target:  5'- -gCGC-ACUCGACgGCGCUcaguugcccaCGugGGCa -3'
miRNA:   3'- aaGUGaUGAGCUGgUGCGG----------GCugCCG- -5'
8181 3' -56.9 NC_001978.2 + 34536 0.68 0.421808
Target:  5'- cUCGCcGgUcCGACCcUGCCgGACGGCu -3'
miRNA:   3'- aAGUGaUgA-GCUGGuGCGGgCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 35653 0.66 0.555679
Target:  5'- -gCGCccaGCUCGACCcCGaagaCCGGuCGGCa -3'
miRNA:   3'- aaGUGa--UGAGCUGGuGCg---GGCU-GCCG- -5'
8181 3' -56.9 NC_001978.2 + 35760 0.75 0.15964
Target:  5'- gUCGCccaGCUCGACCACuCCCGcCGGUu -3'
miRNA:   3'- aAGUGa--UGAGCUGGUGcGGGCuGCCG- -5'
8181 3' -56.9 NC_001978.2 + 36077 0.69 0.393715
Target:  5'- gUUC-CUugUCGcACacaACGCCCGGguCGGCg -3'
miRNA:   3'- -AAGuGAugAGC-UGg--UGCGGGCU--GCCG- -5'
8181 3' -56.9 NC_001978.2 + 38628 0.68 0.41231
Target:  5'- aUC-CUGaaCGaauGCCGCGCCgGGCGGCu -3'
miRNA:   3'- aAGuGAUgaGC---UGGUGCGGgCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 40754 0.66 0.523342
Target:  5'- aUCGCUugGCUCGcauggcuuGCCGCGUUCGGCGuCa -3'
miRNA:   3'- aAGUGA--UGAGC--------UGGUGCGGGCUGCcG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.