Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8181 | 3' | -56.9 | NC_001978.2 | + | 1741 | 0.66 | 0.566592 |
Target: 5'- -aCACuUACcgggucgugUCGGCgGaCGCCgGACGGCa -3' miRNA: 3'- aaGUG-AUG---------AGCUGgU-GCGGgCUGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 2899 | 0.68 | 0.450081 |
Target: 5'- -gCACUcUUCGGgcgggggcacuccCCAgCGCUCGACGGCa -3' miRNA: 3'- aaGUGAuGAGCU-------------GGU-GCGGGCUGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 5422 | 0.66 | 0.566592 |
Target: 5'- --aGCUACcCGGCCACGaCUCagcguuccaugGGCGGCu -3' miRNA: 3'- aagUGAUGaGCUGGUGC-GGG-----------CUGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 6335 | 0.72 | 0.258813 |
Target: 5'- -aUACgUGCUCGACCACGugucgcgcauuCCCGAUcgGGCg -3' miRNA: 3'- aaGUG-AUGAGCUGGUGC-----------GGGCUG--CCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 6804 | 0.66 | 0.523342 |
Target: 5'- -gCGCUcaGCgUCGACCGgauUGCCCGgcgucgugacaACGGCg -3' miRNA: 3'- aaGUGA--UG-AGCUGGU---GCGGGC-----------UGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 7215 | 0.66 | 0.512721 |
Target: 5'- cUUCGCcACccaugUUGACCAUGuUCCGGCGGUc -3' miRNA: 3'- -AAGUGaUG-----AGCUGGUGC-GGGCUGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 7373 | 0.67 | 0.461075 |
Target: 5'- ---gUUGCguggCGACCGaauggaGCCUGACGGCc -3' miRNA: 3'- aaguGAUGa---GCUGGUg-----CGGGCUGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 7620 | 0.75 | 0.151032 |
Target: 5'- gUCGCgucgaACUCGACCACgcuGCCCGcACGGg -3' miRNA: 3'- aAGUGa----UGAGCUGGUG---CGGGC-UGCCg -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 7891 | 0.67 | 0.502189 |
Target: 5'- ----gUGCUCGACC-CGggCGACGGCg -3' miRNA: 3'- aagugAUGAGCUGGuGCggGCUGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 8225 | 0.69 | 0.366864 |
Target: 5'- --gACUugUCGAgCuuGCCCGgACGGUa -3' miRNA: 3'- aagUGAugAGCUgGugCGGGC-UGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 12248 | 0.72 | 0.252181 |
Target: 5'- gUCuCUccGCUCGACCAUGCCC-ACGuGCc -3' miRNA: 3'- aAGuGA--UGAGCUGGUGCGGGcUGC-CG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 12770 | 0.72 | 0.248269 |
Target: 5'- -aCGCUGC-CGACCggcauuacGCGCCCGACucagaacaccuauggGGCg -3' miRNA: 3'- aaGUGAUGaGCUGG--------UGCGGGCUG---------------CCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 15627 | 0.66 | 0.509552 |
Target: 5'- gUUCAacgGCUCGACgguuccggcggcuuCGCugggGCUCGACGGCg -3' miRNA: 3'- -AAGUga-UGAGCUG--------------GUG----CGGGCUGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 17604 | 0.76 | 0.124132 |
Target: 5'- gUUgGCgGCUCGACCACGCCUGACa-- -3' miRNA: 3'- -AAgUGaUGAGCUGGUGCGGGCUGccg -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 18259 | 0.67 | 0.461075 |
Target: 5'- cUCACUcucuguaaggggGCgccaugggCGACCACagcaaGCCgGGCGGCa -3' miRNA: 3'- aAGUGA------------UGa-------GCUGGUG-----CGGgCUGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 18645 | 0.7 | 0.317049 |
Target: 5'- -aCGCUGC-CGGagaCGCGcCCCGACGGa -3' miRNA: 3'- aaGUGAUGaGCUg--GUGC-GGGCUGCCg -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 19288 | 1.09 | 0.000497 |
Target: 5'- gUUCACUACUCGACCACGCCCGACGGCu -3' miRNA: 3'- -AAGUGAUGAGCUGGUGCGGGCUGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 20310 | 0.7 | 0.33307 |
Target: 5'- -aCGCUucGCUCGACgguCAaggaaGCCCGcACGGCg -3' miRNA: 3'- aaGUGA--UGAGCUG---GUg----CGGGC-UGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 24851 | 0.67 | 0.491754 |
Target: 5'- cUUCG-UGCUCGACCccguaugccguCGCCCGAC-GCu -3' miRNA: 3'- -AAGUgAUGAGCUGGu----------GCGGGCUGcCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 25426 | 0.66 | 0.534047 |
Target: 5'- gUUCGg-GCUCGACguCGCCCaGGCugaGGCg -3' miRNA: 3'- -AAGUgaUGAGCUGguGCGGG-CUG---CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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